Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10299 Trifolium pratense HOM05D001934 ORTHO05D002139 3.2e-33 144.4 70 100.0
TPR.G36772 Trifolium pratense HOM05D001934 ORTHO05D002139 6.5e-18 93.6 54 83.3
Medtr4g057340 Medicago truncatula HOM05D001934 ORTHO05D002139 3.6e-16 87.8 54 75.9
Medtr4g057345 Medicago truncatula HOM05D001934 ORTHO05D002139 3.9e-15 84.3 66 63.6
TPR.G36794 Trifolium pratense HOM05D001934 ORTHO05D002139 5.2e-15 84.0 66 65.2
Ca_19318_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 3.3e-14 81.3 66 62.1
Glyma.11G193150 Glycine max HOM05D001934 ORTHO05D002139 3.3e-14 81.3 66 62.1
Glyma.12G080900 Glycine max HOM05D001934 ORTHO05D002139 3.3e-14 81.3 66 62.1
Rhsim13G0100300 Rhododendron simsii HOM05D001934 ORTHO05D002139 7.4e-14 80.1 66 60.6
Atru.chr3.3525 Acer truncatum HOM05D001934 ORTHO05D002139 9.7e-14 79.7 49 73.5
Lalb_Chr19g0136941 Lupinus albus HOM05D001934 ORTHO05D002139 1.3e-13 79.3 49 75.5
vmacro17296 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 1.3e-13 79.3 65 61.5
Solyc11g066370.2 Solanum lycopersicum HOM05D001934 ORTHO05D002139 1.7e-13 79.0 49 73.5
Sopen11g026120 Solanum pennellii HOM05D001934 ORTHO05D002139 1.7e-13 79.0 49 73.5
vmacro03256 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 1.7e-13 79.0 50 74.0
CAN.G546.43 Capsicum annuum HOM05D001934 ORTHO05D002139 2.2e-13 78.6 66 60.6
Gohir.A03G029300 Gossypium hirsutum HOM05D001934 ORTHO05D002139 2.2e-13 78.6 65 60.0
Gohir.D03G139300 Gossypium hirsutum HOM05D001934 ORTHO05D002139 2.2e-13 78.6 65 60.0
Gorai.003G146000 Gossypium raimondii HOM05D001934 ORTHO05D002139 2.2e-13 78.6 65 60.0
Peaxi162Scf01492g00010 Petunia axillaris HOM05D001934 ORTHO05D002139 2.2e-13 78.6 50 74.0
Nitab4.5_0000329g0050 Nicotiana tabacum HOM05D001934 ORTHO05D002139 2.8e-13 78.2 49 73.5
Nitab4.5_0004414g0010 Nicotiana tabacum HOM05D001934 ORTHO05D002139 2.8e-13 78.2 49 73.5
TPR.G36755 Trifolium pratense HOM05D001934 ORTHO05D002139 2.8e-13 78.2 52 78.8
Lj2A1009G37 Lonicera japonica HOM05D001934 ORTHO05D002139 3.7e-13 77.8 49 73.5
Thecc.09G350700 Theobroma cacao HOM05D001934 ORTHO05D002139 3.7e-13 77.8 66 59.1
Cfa010294 Carpinus fangiana HOM05D001934 ORTHO05D002139 6.3e-13 77.0 49 73.5
Ciclev10027871m.g Citrus clementina HOM05D001934 ORTHO05D002139 6.3e-13 77.0 49 71.4
Eucgr.J00386 Eucalyptus grandis HOM05D001934 ORTHO05D002139 6.3e-13 77.0 49 73.5
CiPaw.13G123200 Carya illinoinensis HOM05D001934 ORTHO05D002139 8.2e-13 76.6 49 73.5
MELO3C026949.2 Cucumis melo HOM05D001934 ORTHO05D002139 8.2e-13 76.6 65 60.0
Cc01_g04650 Coffea canephora HOM05D001934 ORTHO05D002139 1.1e-12 76.3 49 73.5
Cc01_g10340 Coffea canephora HOM05D001934 ORTHO05D002139 1.1e-12 76.3 49 73.5
Duzib150G0588 Durio zibethinus HOM05D001934 ORTHO05D002139 1.1e-12 76.3 49 71.4
SEGI_21231 Sequoiadendron giganteum HOM05D001934 ORTHO05D002139 1.1e-12 76.3 66 56.1
unitig_22.g5652 Utricularia gibba HOM05D001934 ORTHO05D002139 1.1e-12 76.3 49 73.5
Actinidia24144 Actinidia chinensis HOM05D001934 ORTHO05D002139 1.4e-12 75.9 50 68.0
Prupe.6G112300 Prunus persica HOM05D001934 ORTHO05D002139 1.4e-12 75.9 49 71.4
CBR_g45434 Chara braunii HOM05D001934 ORTHO05D002139 1.8e-12 75.5 67 52.2
COL.COLO4_11104 Corchorus olitorius HOM05D001934 ORTHO05D002139 1.8e-12 75.5 66 57.6
CSS0030578 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 2.4e-12 75.1 49 71.4
CSS0042491 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 2.4e-12 75.1 49 71.4
ClCG02G021550 Citrullus lanatus HOM05D001934 ORTHO05D002139 2.4e-12 75.1 49 71.4
Haze_23710 Corylus avellana HOM05D001934 ORTHO05D002139 2.4e-12 75.1 49 71.4
CsaV3_6G014300 Cucumis sativus L. HOM05D001934 ORTHO05D002139 2.4e-12 75.1 49 71.4
Sed0019273 Sechium edule HOM05D001934 ORTHO05D002139 2.4e-12 75.1 65 60.0
MSTRG.17761 Avicennia marina HOM05D001934 ORTHO05D002139 3.1e-12 74.7 49 71.4
Oeu040437.1 Olea europaea HOM05D001934 ORTHO05D002139 3.1e-12 74.7 49 71.4
Potri.009G005900 Populus trichocarpa HOM05D001934 ORTHO05D002139 3.1e-12 74.7 49 69.4
FAN16G0005 Fragaria x ananassa HOM05D001934 ORTHO05D002139 4.1e-12 74.3 49 71.4
Phvul.005G021100 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 4.1e-12 74.3 66 56.1
Hund08363 Selenicereus undatus HOM05D001934 ORTHO05D002139 4.1e-12 74.3 65 58.5
Cpa.g.sc1.10 Carica papaya HOM05D001934 ORTHO05D002139 5.3e-12 73.9 49 69.4
Sc06g0010820 Simmondsia chinensis HOM05D001934 ORTHO05D002139 5.3e-12 73.9 49 69.4
SGA_v2.0_scaffold442G51676 Striga asiatica HOM05D001934 ORTHO05D002139 5.3e-12 73.9 49 71.4
TAR625G1443 Trochodendron aralioides HOM05D001934 ORTHO05D002139 5.3e-12 73.9 49 71.4
Aqoxy1G01108 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 7.0e-12 73.6 49 67.3
FAN11G3232 Fragaria x ananassa HOM05D001934 ORTHO05D002139 7.0e-12 73.6 49 71.4
Manes.11G152000 Manihot esculenta HOM05D001934 ORTHO05D002139 7.0e-12 73.6 49 69.4
Phvul.011G085900 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 7.0e-12 73.6 66 56.1
PGR119G0273 Punica granatum HOM05D001934 ORTHO05D002139 7.0e-12 73.6 49 71.4
EL10Ac9g22613 Beta vulgaris HOM05D001934 ORTHO05D002139 9.1e-12 73.2 49 67.3
CANSAT54G0170 Cannabis sativa HOM05D001934 ORTHO05D002139 9.1e-12 73.2 49 69.4
Migut.N02546 Erythranthe guttata HOM05D001934 ORTHO05D002139 9.1e-12 73.2 49 69.4
Psat7g191720 Pisum sativum HOM05D001934 ORTHO05D002139 9.1e-12 73.2 66 57.6
RcHm_v2.0_Chr5g0056931 Rosa chinensis HOM05D001934 ORTHO05D002139 9.1e-12 73.2 49 69.4
MD03G1127000 Malus domestica HOM05D001934 ORTHO05D002139 1.2e-11 72.8 49 69.4
Oeu007739.1 Olea europaea HOM05D001934 ORTHO05D002139 1.2e-11 72.8 49 69.4
Os10g0489200 Oryza sativa ssp. japonica HOM05D001934 ORTHO05D002139 1.2e-11 72.8 55 60.0
Peaxi162Scf00420g00341 Petunia axillaris HOM05D001934 ORTHO05D002139 1.2e-11 72.8 49 69.4
VMungo1127G0172 Vigna mungo HOM05D001934 ORTHO05D002139 1.2e-11 72.8 66 56.1
Lsat_1_v5_gn_1_64561 Lactuca sativa HOM05D001934 ORTHO05D002139 1.6e-11 72.4 50 64.0
Lj3g0025418 Lotus japonicus HOM05D001934 ORTHO05D002139 1.6e-11 72.4 49 67.3
SalBow3G0225 Salvia bowleyana HOM05D001934 ORTHO05D002139 1.6e-11 72.4 49 69.4
Zm00001eb045200 Zea mays HOM05D001934 ORTHO05D002139 1.6e-11 72.4 65 52.3
arahy.Tifrunner.gnm1.ann1.489L6Z Arachis hypogaea HOM05D001934 ORTHO05D002139 2.0e-11 72.0 49 69.4
arahy.Tifrunner.gnm1.ann1.CF9NWX Arachis hypogaea HOM05D001934 ORTHO05D002139 2.0e-11 72.0 49 69.4
arahy.Tifrunner.gnm1.ann1.Z70S0B Arachis hypogaea HOM05D001934 ORTHO05D002139 2.0e-11 72.0 66 56.1
AUR62014959 Chenopodium quinoa HOM05D001934 ORTHO05D002139 2.0e-11 72.0 49 69.4
AUR62029176 Chenopodium quinoa HOM05D001934 ORTHO05D002139 2.0e-11 72.0 49 69.4
ATR0749G104 Amborella trichopoda HOM05D001934 ORTHO05D002139 2.6e-11 71.6 55 63.6
FvH4_3g30740 Fragaria vesca HOM05D001934 ORTHO05D002139 2.6e-11 71.6 49 69.4
BcaC07g41965 Brassica carinata HOM05D001934 ORTHO05D002139 3.5e-11 71.2 65 55.4
A09p66010 Brassica napus HOM05D001934 ORTHO05D002139 3.5e-11 71.2 65 55.4
C08p50170 Brassica napus HOM05D001934 ORTHO05D002139 3.5e-11 71.2 65 55.4
BolC8t52546H Brassica oleracea HOM05D001934 ORTHO05D002139 3.5e-11 71.2 65 55.4
BraA09t41940Z Brassica rapa HOM05D001934 ORTHO05D002139 3.5e-11 71.2 65 55.4
CDE08G0024 Ceratophyllum demersum HOM05D001934 ORTHO05D002139 3.5e-11 71.2 65 55.4
Hma1.2p1_0779F.1_g216700 Hydrangea macrophylla HOM05D001934 ORTHO05D002139 4.5e-11 70.9 49 65.3
FvH4_3g30730 Fragaria vesca HOM05D001934 ORTHO05D002139 5.9e-11 70.5 49 69.4
ECA248G1944 Erigeron canadensis HOM05D001934 ORTHO05D002139 7.7e-11 70.1 66 51.5
Mapoly0033s0129 Marchantia polymorpha HOM05D001934 ORTHO05D002139 7.7e-11 70.1 65 52.3
Peaxi162Scf00420g00330 Petunia axillaris HOM05D001934 ORTHO05D002139 7.7e-11 70.1 49 67.3
arahy.Tifrunner.gnm1.ann1.E6T32I Arachis hypogaea HOM05D001934 ORTHO05D002139 1.0e-10 69.7 49 65.3
HanXRQChr11g0345941 Helianthus annuus HOM05D001934 ORTHO05D002139 1.0e-10 69.7 50 62.0
Pp3c13_20200 Physcomitrium patens HOM05D001934 ORTHO05D002139 1.0e-10 69.7 66 51.5
Pp3c13_20209 Physcomitrium patens HOM05D001934 ORTHO05D002139 1.0e-10 69.7 66 51.5
Ah.01g003310 Amaranthus hybridus HOM05D001934 ORTHO05D002139 1.3e-10 69.3 49 65.3
FAN21G1990 Fragaria x ananassa HOM05D001934 ORTHO05D002139 1.3e-10 69.3 49 67.3
MD11G1147600 Malus domestica HOM05D001934 ORTHO05D002139 1.3e-10 69.3 49 67.3
QL01p015243 Quercus lobata HOM05D001934 ORTHO05D002139 1.3e-10 69.3 49 65.3
GSVIVG01031470001 Vitis vinifera HOM05D001934 ORTHO05D002139 1.3e-10 69.3 49 65.3
ATR0329G039 Amborella trichopoda HOM05D001934 ORTHO05D002139 1.7e-10 68.9 49 65.3
DCAR_018768 Daucus carota HOM05D001934 ORTHO05D002139 1.7e-10 68.9 49 63.3
C05p06240 Brassica napus HOM05D001934 ORTHO05D002139 2.2e-10 68.6 65 53.8
Migut.D00893 Erythranthe guttata HOM05D001934 ORTHO05D002139 2.2e-10 68.6 49 63.3
HPP92_022658 Vanilla planifolia HOM05D001934 ORTHO05D002139 2.2e-10 68.6 49 61.2
BcaB07g34055 Brassica carinata HOM05D001934 ORTHO05D002139 2.9e-10 68.2 65 53.8
A06p05190 Brassica napus HOM05D001934 ORTHO05D002139 2.9e-10 68.2 65 53.8
BraA06t23726Z Brassica rapa HOM05D001934 ORTHO05D002139 2.9e-10 68.2 65 53.8
Ca_04368_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 3.8e-10 67.8 49 65.3
Sp1g06770 Schrenkiella parvula HOM05D001934 ORTHO05D002139 3.8e-10 67.8 65 53.8
Nn6g35237 Nelumbo nucifera HOM05D001934 ORTHO05D002139 5.0e-10 67.4 49 65.3
SMO134G0141 Selaginella moellendorffii HOM05D001934 ORTHO05D002139 5.0e-10 67.4 66 50.0
AL1G18510 Arabidopsis lyrata HOM05D001934 ORTHO05D002139 6.5e-10 67.0 65 52.3
AT1G08130 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 6.5e-10 67.0 65 52.3
Medtr8g468400 Medicago truncatula HOM05D001934 ORTHO05D002139 6.5e-10 67.0 49 61.2
Dinv29375 Davidia involucrata HOM05D001934 ORTHO05D002139 8.5e-10 66.6 49 61.2
Thhalv10006843m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 8.5e-10 66.6 65 52.3
TWI75G1147 Tripterygium wilfordii HOM05D001934 ORTHO05D002139 8.5e-10 66.6 49 65.3
BcaC05g24731 Brassica carinata HOM05D001934 ORTHO05D002139 1.9e-09 65.5 65 52.3
BolC5t29379H Brassica oleracea HOM05D001934 ORTHO05D002139 1.9e-09 65.5 65 52.3
Carub.0001s0748 Capsella rubella HOM05D001934 ORTHO05D002139 1.9e-09 65.5 65 50.8
PSO339G0390 Papaver somniferum HOM05D001934 ORTHO05D002139 1.9e-09 65.5 49 59.2
Thhalv10028321m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 2.5e-09 65.1 50 58.0
Hund12958 Selenicereus undatus HOM05D001934 ORTHO05D002139 2.5e-09 65.1 47 61.7
TPR.G8175 Trifolium pratense HOM05D001934 ORTHO05D002139 2.5e-09 65.1 48 62.5
HanXRQChr01g0019601 Helianthus annuus HOM05D001934 ORTHO05D002139 5.5e-09 63.9 50 58.0
AagrBONN_evm.TU.Sc2ySwM_362.157 Anthoceros agrestis HOM05D001934 ORTHO05D002139 7.2e-09 63.5 49 57.1
Aa31sc759G20 Aethionema arabicum HOM05D001934 ORTHO05D002139 9.4e-09 63.2 44 68.2
Thhalv10028230m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 1.2e-08 62.8 49 59.2
Aqoxy1G02004 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 1.6e-08 62.4 48 60.4
arahy.Tifrunner.gnm1.ann1.NKU5VC Arachis hypogaea HOM05D000764 ORTHO05D002006 2.1e-08 62.0 51 60.8
PRCOL_00004276 Prasinoderma coloniale HOM05D001934 ORTHO05D002139 8.0e-08 60.1 70 41.4
AL1G56130 Arabidopsis lyrata HOM05D001934 ORTHO05D002139 1.0e-07 59.7 49 57.1
SHI06224 Sapria himalayana HOM05D001934 ORTHO05D002139 1.0e-07 59.7 49 57.1
COL.COLO4_10488 Corchorus olitorius HOM05D001934 ORTHO05D002139 1.4e-07 59.3 49 53.1
MCO11G338 Micromonas commoda HOM05D001934 ORTHO05D002139 4.0e-07 57.8 49 51.0
CARHR260680 Cardamine hirsuta HOM05D001934 ORTHO05D002139 1.5e-06 55.8 49 53.1
AT1G49250 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 3.3e-06 54.7 49 51.0


User provided reference genes

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