Gene: PSO339G0390
General Information
Structural Information
- Species Papaver somniferum
- Gene Identifier PSO339G0390
- Transcript Identifier PSO339G0390.01
- Gene Type Coding gene
- Location NC_039366.1 : 56508928-56514693 : negative
Gene Family Information
- ID HOM05D001934
- #Genes/#Species 342/100
- Phylogenetic origin
- ID ORTHO05D002139
- #Genes/#Species 313/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna-XM_026562125.1
- pid XP_026417910.1
- id gene-LOC113313363
Descriptions
- product DNA ligase 1-like
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:2000685 | ISO | PLAZA Integrative Orthology | positive regulation of cellular response to X-ray | AT1G66730 |
| GO:0010225 | ISO | PLAZA Integrative Orthology | response to UV-C | AT1G66730 |
| GO:0002237 | ISO | PLAZA Integrative Orthology | response to molecule of bacterial origin | AT1G66730 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT1G66730 |
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT1G66730 |
| GO:0000012 | ISO | PLAZA Integrative Orthology | single strand break repair | AT1G08130 |
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | AT1G08130 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT1G66730 |
| GO:0006303 | ISO | PLAZA Integrative Orthology | double-strand break repair via nonhomologous end joining | AT1G66730 |
| GO:1904975 | ISO | PLAZA Integrative Orthology | response to bleomycin | AT1G66730 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT1G66730 |
| GO:0015074 | ISO | PLAZA Integrative Orthology | DNA integration | AT1G66730 |
| GO:0080111 | ISO | PLAZA Integrative Orthology | DNA demethylation | AT1G08130 |
| GO:0006260 | ISO | PLAZA Integrative Orthology | DNA replication | AT1G08130 |
| GO:0071897 | IEA | InterPro | DNA biosynthetic process | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0006281 | IEA | InterPro | DNA repair |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005524 | IEA | InterPro | ATP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G08130 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT1G08130 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G08130 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012310 | DNA ligase, ATP-dependent, central |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal |
| IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR000977 | DNA ligase, ATP-dependent |