Gene: TPR.G36772

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G36772
  • Transcript Identifier TPR.T38003
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_LG4 : 19066723-19073342 : positive

Gene Family Information

  • ID HOM05D001934
  • #Genes/#Species 342/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA38003.v2
  • id Tp57577_TGAC_v2_gene36772.v2
  • pacid 35964129

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0000012
ISO
PLAZA Integrative Orthologysingle strand break repair AT1G08130
GO:0006260
ISO
PLAZA Integrative OrthologyDNA replication AT1G08130
GO:0080111
ISO
PLAZA Integrative OrthologyDNA demethylation AT1G08130
GO:0071897
ISO
PLAZA Homology (enrichment)DNA biosynthetic process HOM05D001934
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT1G08130

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G08130
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G08130
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G08130

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012310 DNA ligase, ATP-dependent, central
IPR012309 DNA ligase, ATP-dependent, C-terminal
IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR012340 Nucleic acid-binding, OB-fold
IPR012308 DNA ligase, ATP-dependent, N-terminal
Mapman id Description
50.6.5 Enzyme classification.EC_6 ligases.EC_6.5 ligase forming phosphoric ester bond