Gene: Solyc11g066370.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g066370.2
- Transcript Identifier Solyc11g066370.2.1
- Gene Type Coding gene
- Location SL4.0ch11 : 50153897-50166976 : negative
Gene Family Information
- ID HOM05D001934
- #Genes/#Species 342/100
- Phylogenetic origin
- ID ORTHO05D002139
- #Genes/#Species 313/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc11g066370.2.1
- uniprot A0A3Q7IYP1
- gene_id Solyc11g066370
Descriptions
- Description DNA ligase (AHRD V3.3 *** A0A1U8EV20_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006303 | ISO | PLAZA Integrative Orthology | double-strand break repair via nonhomologous end joining | AT1G66730 |
| GO:0006266 | IBA | GOA Database | DNA ligation | |
| GO:0006273 | IBA | GOA Database | lagging strand elongation | |
| GO:0080111 | ISO | PLAZA Integrative Orthology | DNA demethylation | AT1G08130 |
| GO:0015074 | ISO | PLAZA Integrative Orthology | DNA integration | AT1G66730 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT1G66730 |
| GO:1904975 | ISO | PLAZA Integrative Orthology | response to bleomycin | AT1G66730 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT1G66730 |
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | AT1G08130 |
| GO:0000012 | ISO | PLAZA Integrative Orthology | single strand break repair | AT1G08130 |
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT1G66730 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT1G66730 |
| GO:0002237 | ISO | PLAZA Integrative Orthology | response to molecule of bacterial origin | AT1G66730 |
| GO:0010225 | ISO | PLAZA Integrative Orthology | response to UV-C | AT1G66730 |
| GO:2000685 | ISO | PLAZA Integrative Orthology | positive regulation of cellular response to X-ray | AT1G66730 |
| GO:0006310 | IEA | GOA Database | DNA recombination | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0071897 | IEA | GOA Database | DNA biosynthetic process | |
| GO:0071897 | IEA | InterPro | DNA biosynthetic process | |
| GO:0006260 | IEA | GOA Database | DNA replication | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003910 | IBA IEA | GOA Database | DNA ligase (ATP) activity | |
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity | |
| GO:0016874 | IEA | GOA Database | ligase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003909 | IEA | GOA Database | DNA ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IBA | GOA Database | cytoplasm | |
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G08130 |
| GO:0005739 | IBA | GOA Database | mitochondrion |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000977 | DNA ligase, ATP-dependent |
| IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily |
| IPR012310 | DNA ligase, ATP-dependent, central |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal |