Gene: Sopen11g026120
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g026120
- Transcript Identifier Sopen11g026120.1
- Gene Type Coding gene
- Location Spenn-ch11 : 61849429-61862698 : negative
Gene Family Information
- ID HOM05D001934
- #Genes/#Species 342/100
- Phylogenetic origin
- ID ORTHO05D002139
- #Genes/#Species 313/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen11g026120.1
Descriptions
- Description Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5 untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. | DNA ligase 1 (LIG1) | FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding | INVOLVED IN: DNA repair, DNA replication, DNA recombination | LOCATED IN: mitochondrion, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , DNA ligase, N-terminal , ATP dependent DNA ligase, central , ATP dependent DNA ligase, C-terminal , ATP-dependent DNA ligase , ATP-dependent DNA ligase, conserved site | BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0071897 | IEA | InterPro | DNA biosynthetic process | |
| GO:0000012 | ISO | PLAZA Integrative Orthology | single strand break repair | AT1G08130 |
| GO:0006260 | ISO | PLAZA Integrative Orthology | DNA replication | AT1G08130 |
| GO:0080111 | ISO | PLAZA Integrative Orthology | DNA demethylation | AT1G08130 |
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | AT1G08130 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity | |
| GO:0005524 | IEA | InterPro | ATP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G08130 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT1G08130 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G08130 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal |
| IPR012310 | DNA ligase, ATP-dependent, central |
| IPR000977 | DNA ligase, ATP-dependent |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal |