Gene: TPR.G8175
General Information
Structural Information
- Species Trifolium pratense
- Gene Identifier TPR.G8175
- Transcript Identifier TPR.T8453
- Gene Type Coding gene
- Location Tp57577_TGAC_v2_LG2 : 21619200-21625596 : negative
Gene Family Information
- ID HOM05D001934
- #Genes/#Species 342/100
- Phylogenetic origin
- ID ORTHO05D002139
- #Genes/#Species 313/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Tp57577_TGAC_v2_mRNA8453.v2
- id Tp57577_TGAC_v2_gene8175.v2
- pacid 35972420
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0071897 | IEA | InterPro | DNA biosynthetic process | |
| GO:0000012 | ISO | PLAZA Integrative Orthology | single strand break repair | AT1G08130 |
| GO:0006260 | ISO | PLAZA Integrative Orthology | DNA replication | AT1G08130 |
| GO:0080111 | ISO | PLAZA Integrative Orthology | DNA demethylation | AT1G08130 |
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | AT1G08130 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G08130 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT1G08130 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G08130 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012310 | DNA ligase, ATP-dependent, central |
| IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily |
| IPR000977 | DNA ligase, ATP-dependent |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal |
| Mapman id | Description |
|---|---|
| 50.6.5 | Enzyme classification.EC_6 ligases.EC_6.5 ligase forming phosphoric ester bond |