Gene: AT1G49250
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G49250
- Transcript Identifier AT1G49250.1
- Gene Type Coding gene
- Location Chr1 : 18220533-18224256 : positive
Gene Family Information
- ID HOM05D001934
- #Genes/#Species 342/100
- Phylogenetic origin
- ID ORTHO05D002139
- #Genes/#Species 313/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G49250.1
- uniprot F4I1P7
Descriptions
- Description ATP-dependent DNA ligase
- Computational description ATP-dependent DNA ligase; FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 3343 Blast hits to 3310 proteins in 864 species: Archae - 299; Bacteria - 1362; Metazoa - 364; Fungi - 424; Plants - 106; Viruses - 161; Other Eukaryotes - 627 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006310 | IEA | GOA Database | DNA recombination | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0071897 | IEA | Gene Ontology | DNA biosynthetic process | |
| GO:0071897 | IEA | InterPro | DNA biosynthetic process | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006260 | IEA | GOA Database | DNA replication | |
| GO:0006266 | IBA | Gene Ontology | DNA ligation | 1 |
| GO:0006273 | IBA | Gene Ontology | lagging strand elongation | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003910 | IEA | GOA Database | DNA ligase (ATP) activity | |
| GO:0003910 | IBA | Gene Ontology | DNA ligase (ATP) activity | 1 |
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity | |
| GO:0003677 | IEA | Gene Ontology | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003909 | IEA | GOA Database | DNA ligase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016874 | IEA | GOA Database | ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | IBA | Gene Ontology | mitochondrion | 1 |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal |
| IPR000977 | DNA ligase, ATP-dependent |
| IPR012310 | DNA ligase, ATP-dependent, central |