Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 1.1e-270 936.0 486 100.0
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 4.9e-189 664.8 458 76.6
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 4.6e-187 658.3 457 75.7
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 1.5e-185 653.3 486 72.8
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 3.6e-184 648.7 458 76.9
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.6e-182 642.5 454 74.4
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 5.8e-182 641.3 481 71.5
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 2.2e-181 639.4 488 70.5
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.5e-179 632.1 455 74.5
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 6.0e-179 631.3 473 72.9
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.1e-178 628.2 445 76.4
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 8.1e-176 620.9 450 75.1
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.8e-175 619.8 488 69.1
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 3.4e-174 615.5 494 68.6
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 1.3e-173 613.6 463 73.4
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 5.5e-172 608.2 443 74.3
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 5.5e-172 608.2 488 68.4
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 2.3e-170 602.8 476 69.3
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 2.3e-170 602.8 481 69.2
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 2.5e-169 599.4 463 71.7
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 7.4e-169 597.8 468 68.8
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 3.7e-168 595.5 491 67.6
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 5.3e-167 591.7 470 69.6
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 6.9e-167 591.3 490 66.7
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 1.5e-166 590.1 481 69.0
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 5.8e-166 588.2 469 68.7
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 1.3e-165 587.0 486 67.1
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 1.3e-165 587.0 481 66.1
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 1.4e-164 583.6 469 68.0
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 3.2e-164 582.4 443 71.6
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 2.1e-163 579.7 488 66.2
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.3e-162 577.0 519 64.2
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 3.9e-162 575.5 468 67.9
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 6.7e-162 574.7 460 70.0
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 1.1e-161 573.9 467 68.5
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 8.2e-160 567.8 449 69.9
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.1e-159 567.4 478 66.7
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 1.2e-158 563.9 480 67.3
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.2e-158 563.9 475 67.8
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 3.8e-157 558.9 482 64.3
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 5.5e-156 555.1 486 64.8
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 9.3e-156 554.3 484 65.5
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 6.1e-155 551.6 457 67.2
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 3.9e-154 548.9 458 69.4
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.5e-153 547.0 471 64.1
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 7.4e-153 544.7 466 63.1
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 1.6e-152 543.5 472 64.6
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.6e-152 543.5 455 66.6
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 2.8e-152 542.7 481 64.0
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 5.3e-151 538.5 451 66.1
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.5e-150 537.0 473 67.0
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 2.6e-150 536.2 467 64.9
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 1.0e-149 534.3 483 62.7
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 3.8e-149 532.3 486 62.3
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 5.0e-149 531.9 461 63.6
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 8.5e-149 531.2 449 64.8
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 1.9e-148 530.0 510 59.0
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 2.3e-146 523.1 453 64.2
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 8.8e-146 521.2 477 60.8
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 3.7e-144 515.8 465 63.9
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.8e-143 513.5 449 61.2
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 4.1e-143 512.3 455 63.1
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 9.1e-143 511.1 474 61.2
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.2e-142 510.8 449 62.4
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 1.5e-142 510.4 450 62.7
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 2.6e-142 509.6 450 60.4
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 1.7e-141 506.9 452 60.4
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 2.2e-141 506.5 448 59.4
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 6.5e-141 505.0 449 61.9
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 1.1e-140 504.2 461 59.9
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 2.5e-140 503.1 475 61.1
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 5.5e-140 501.9 448 59.4
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 2.1e-139 500.0 456 63.4
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 2.3e-138 496.5 453 61.8
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 2.0e-137 493.4 459 57.7
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 5.7e-137 491.9 473 58.6
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 2.8e-136 489.6 648 49.8
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 4.8e-136 488.8 455 58.2
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.4e-135 487.3 459 58.0
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 2.4e-135 486.5 411 69.1
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 4.1e-135 485.7 422 64.0
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 3.8e-133 479.2 448 57.1
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 5.5e-132 475.3 420 67.4
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 2.1e-131 473.4 350 74.3
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 8.0e-131 471.5 476 55.7
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 2.3e-130 469.9 467 55.2
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 5.3e-127 458.8 449 61.0
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 4.8e-120 435.6 342 67.8
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 1.4e-119 434.1 379 65.2
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.1e-116 424.5 458 54.4
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 5.5e-116 422.2 335 70.7
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 4.4e-113 412.5 335 66.3
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.2e-110 404.4 413 56.4
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 2.9e-109 399.8 357 65.5
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 5.7e-105 385.6 409 58.7
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 4.1e-103 379.4 318 67.6
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.1e-98 363.2 264 76.1
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 5.6e-92 342.4 410 48.8
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.7e-88 330.9 277 67.9
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.1e-86 323.9 404 50.2
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 5.2e-82 309.3 332 52.4
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.7e-80 304.3 431 46.2
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 9.2e-79 298.5 281 57.3
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 4.0e-66 256.5 357 48.7
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 3.2e-63 246.9 288 53.8
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 6.7e-61 239.2 389 45.0
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 3.8e-56 223.4 595 31.9
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 8.4e-56 222.2 181 61.9
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.5e-46 190.3 144 69.4
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 9.7e-44 182.2 186 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.2e-43 181.0 260 46.2
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 6.3e-43 179.5 103 84.5
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.1e-42 178.7 165 66.1
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 3.4e-41 173.7 102 82.4
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.5e-39 167.5 93 83.9
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.7e-38 164.1 350 37.1
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 2.7e-38 164.1 181 58.6
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 1.7e-27 128.3 113 63.7
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 3.7e-27 127.1 100 65.0
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 5.9e-25 119.8 173 50.9
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.6e-20 104.4 114 50.9
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 2.0e-17 94.7 54 77.8
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 1.0e-16 92.4 107 55.1
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 2.2e-16 91.3 49 83.7
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.2e-15 87.4 155 36.8
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 5.5e-15 86.7 50 80.0
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 5.5e-15 86.7 50 80.0
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 4.4e-12 77.0 81 46.9
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 1.3e-11 75.5 50 70.0
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 2.2e-11 74.7 52 67.3
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 2.7e-09 67.8 43 69.8
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 5.9e-09 66.6 56 55.4
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.3e-08 65.5 118 38.1
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 6.5e-08 63.2 41 73.2
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 6.5e-08 63.2 79 48.1
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 4.2e-07 60.5 33 84.8
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 2.1e-06 58.2 63 52.4


User provided reference genes

Program Settings