Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.2e-268 929.5 541 100.0
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.1e-221 773.5 544 84.0
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.4e-215 751.9 539 82.9
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.3e-214 750.0 542 80.6
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 7.8e-212 740.7 543 78.8
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 5.4e-205 718.0 544 79.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.4e-205 718.0 541 80.8
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 6.0e-204 714.5 546 77.5
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.9e-203 711.8 542 79.0
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 5.3e-200 701.4 545 77.8
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 9.9e-199 697.2 542 74.5
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.3e-198 696.8 555 74.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.1e-196 689.5 543 79.6
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 4.6e-196 688.3 547 77.3
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 6.0e-196 688.0 544 73.0
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 2.4e-192 676.0 542 72.7
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 6.9e-192 674.5 545 75.6
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.2e-190 669.5 543 75.5
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 4.9e-190 668.3 543 74.2
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 6.5e-190 667.9 544 72.1
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.5e-189 664.8 591 72.6
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.5e-189 664.8 591 72.6
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.2e-188 663.7 545 72.5
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 3.5e-188 662.1 544 75.7
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 2.3e-187 659.4 555 71.5
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.7e-185 652.1 544 71.3
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 6.9e-184 647.9 546 70.1
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 4.5e-183 645.2 546 71.6
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 1.7e-182 643.3 545 71.0
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.2e-182 642.9 543 73.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 3.8e-182 642.1 541 69.9
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.2e-180 637.1 544 73.3
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.3e-179 633.6 543 74.2
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.3e-179 633.6 541 69.3
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.3e-179 632.9 554 73.8
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 8.7e-179 630.9 544 74.8
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 8.7e-179 630.9 550 70.0
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.5e-178 630.2 543 71.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 4.3e-178 628.6 539 72.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 5.7e-178 628.2 544 72.4
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 7.4e-178 627.9 541 72.1
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 9.7e-178 627.5 534 70.0
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.3e-177 627.1 578 70.9
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.2e-177 626.3 544 73.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.8e-177 625.9 554 73.1
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.3e-177 624.8 554 73.3
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.1e-176 622.1 556 73.2
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 7.2e-173 611.3 529 73.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.7e-172 609.4 554 70.9
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.6e-172 609.0 544 66.0
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 8.8e-171 604.4 541 70.2
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 4.4e-170 602.1 557 70.4
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.7e-169 600.1 496 71.6
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 3.7e-169 599.0 584 66.3
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 6.3e-169 598.2 558 70.4
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 6.3e-169 598.2 550 70.5
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.8e-168 596.7 567 66.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 3.1e-168 595.9 546 67.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.2e-167 594.0 540 64.3
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 2.0e-167 593.2 554 67.3
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 3.4e-167 592.4 544 66.4
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.2e-166 589.7 550 68.2
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 5.5e-165 585.1 543 70.2
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.7e-164 582.0 553 67.1
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 7.9e-164 581.3 544 70.6
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.4e-163 580.5 544 67.8
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 8.8e-163 577.8 534 67.2
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.6e-162 576.2 514 73.0
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.2e-161 573.2 359 86.1
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 8.2e-161 571.2 504 69.0
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.1e-160 570.9 549 67.2
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 9.1e-160 567.8 504 68.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.2e-159 567.4 551 68.6
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 5.9e-159 565.1 486 73.3
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.2e-157 558.9 519 70.9
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 4.4e-154 548.9 575 60.9
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.2e-153 546.6 587 59.5
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 7.0e-152 541.6 550 67.3
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.2e-151 540.8 552 58.7
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 7.7e-151 538.1 548 58.2
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.7e-150 537.0 565 64.1
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.8e-150 535.8 551 65.7
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 5.0e-150 535.4 514 69.3
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 6.5e-150 535.0 545 63.7
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.1e-149 534.3 547 65.8
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 2.5e-149 533.1 562 60.3
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.8e-147 526.9 529 68.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.8e-147 526.9 538 60.2
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 8.8e-147 524.6 564 57.6
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 2.0e-146 523.5 549 63.4
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 7.5e-146 521.5 562 61.9
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.3e-145 520.8 542 62.7
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 8.3e-145 518.1 545 60.7
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 2.4e-144 516.5 549 65.2
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 7.0e-144 515.0 551 65.0
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 7.0e-144 515.0 551 65.0
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.9e-143 511.9 544 61.8
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.9e-142 509.6 838 45.3
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 6.5e-142 508.4 549 64.7
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.6e-142 508.1 580 57.4
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 1.5e-141 507.3 551 64.6
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.2e-138 497.7 547 64.5
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 3.4e-138 496.1 487 65.9
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.2e-137 493.4 537 62.6
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 3.7e-137 492.7 560 63.0
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.1e-136 491.1 547 63.6
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.5e-135 486.1 504 69.0
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 2.9e-134 483.0 465 69.5
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 2.3e-131 473.4 550 62.4
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.0e-131 472.6 534 58.8
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 8.9e-131 471.5 550 59.6
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 2.9e-129 466.5 546 53.5
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.4e-128 464.2 467 67.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-127 461.1 538 61.0
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 5.9e-127 458.8 554 58.5
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.5e-125 454.1 557 59.2
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.4e-123 447.6 588 53.4
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.1e-120 438.0 543 57.6
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.0e-119 433.7 555 53.7
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.3e-118 431.0 412 70.6
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.6e-116 422.9 363 77.1
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 4.7e-116 422.5 539 56.8
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 4.7e-116 422.5 539 56.8
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.4e-113 412.1 326 68.1
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.3e-110 404.4 550 51.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.9e-110 402.9 554 53.6
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 3.6e-108 396.4 540 47.0
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.4e-107 393.7 442 64.5
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-102 378.3 559 47.9
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.3e-102 377.9 325 81.2
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.0e-102 376.7 559 47.8
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.5e-101 373.6 559 47.2
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.6e-101 371.7 552 48.2
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.8e-100 370.2 552 48.0
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 3.4e-98 363.2 522 55.4
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.2e-97 360.5 554 44.9
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 6.0e-95 352.4 554 44.9
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.0e-94 350.1 425 54.6
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 8.7e-86 322.0 195 77.9
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.3e-85 319.7 371 53.1
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 4.9e-81 306.2 367 65.4
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 6.9e-75 285.8 368 64.1
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.6e-71 274.6 312 57.7
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 3.9e-70 270.0 349 58.7
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.1e-67 260.4 333 48.9
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-60 238.4 509 39.3
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.0e-57 226.5 244 61.1
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.3e-45 187.2 176 80.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.3e-41 175.3 181 68.5
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.0e-39 166.0 101 75.2
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-34 150.6 251 41.4
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-32 145.6 209 52.2
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 2.5e-32 144.4 212 49.5
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.1e-31 141.4 314 36.0
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.3e-28 132.1 103 79.6
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 4.1e-27 127.1 268 39.2
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 6.6e-25 119.8 176 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.4e-22 112.1 136 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.2e-20 104.8 245 41.2
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.2e-19 99.4 208 39.9
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.5e-18 97.1 110 56.4
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.7e-17 95.1 51 84.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 2.9e-17 94.4 54 74.1
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.9e-17 94.4 56 82.1
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-16 92.0 213 44.6
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-14 85.5 113 54.0
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-14 85.1 136 47.8
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 4.4e-13 80.5 73 61.6
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 4.4e-13 80.5 73 61.6
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.8e-13 80.1 95 52.6
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.5e-13 79.7 94 52.1
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.3e-12 79.0 59 64.4
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.7e-12 77.4 75 56.0
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.5e-08 64.7 122 32.0
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 9.5e-08 62.8 166 39.2
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.6e-07 60.8 54 59.3
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.3e-06 58.2 94 44.7
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.1e-06 57.8 65 47.7


User provided reference genes

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