Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.2e-223 780.0 541 100.0
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.6e-204 716.5 543 85.6
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 3.3e-202 708.8 541 90.4
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 4.0e-192 675.2 544 81.1
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 4.5e-191 671.8 543 83.8
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.2e-189 665.2 542 83.6
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 9.3e-181 637.5 564 78.0
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 4.3e-178 628.6 564 77.3
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 4.1e-176 622.1 566 76.5
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 4.1e-176 622.1 566 76.5
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 9.1e-176 620.9 564 76.6
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 2.0e-175 619.8 566 76.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 7.2e-173 611.3 551 71.1
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 8.8e-163 577.8 547 71.5
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.0e-162 576.6 540 72.4
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 4.5e-159 565.5 547 69.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-154 550.8 536 75.4
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.0e-150 537.7 548 65.0
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 4.2e-149 532.3 546 66.7
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 4.7e-148 528.9 549 64.7
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 4.4e-146 522.3 540 69.1
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 5.7e-146 521.9 566 62.7
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 3.7e-145 519.2 548 61.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 2.4e-144 516.5 548 64.1
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.1e-144 514.6 548 65.0
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 7.7e-143 511.5 550 62.5
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.3e-142 510.0 547 60.5
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 2.5e-141 506.5 546 62.3
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 3.2e-141 506.1 540 69.8
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 3.2e-141 506.1 540 69.8
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 5.5e-141 505.4 553 58.6
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 6.1e-140 501.9 548 60.6
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 8.0e-140 501.5 547 62.5
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.3e-139 500.0 546 68.1
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.0e-139 499.2 550 62.4
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 6.8e-139 498.4 546 67.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.8e-139 498.4 591 60.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.8e-139 498.4 591 60.9
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.2e-138 497.7 548 65.9
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.5e-138 497.3 558 60.4
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.8e-138 494.6 555 57.8
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.3e-137 494.2 561 61.1
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.3e-137 494.2 549 62.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.8e-137 493.0 548 64.1
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.1e-136 491.1 550 60.9
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 4.1e-136 489.2 544 62.5
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 4.1e-136 489.2 552 57.4
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 9.2e-136 488.0 545 57.2
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.2e-135 487.6 554 63.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.9e-135 485.3 556 64.6
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.0e-134 484.6 557 63.0
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 1.3e-134 484.2 550 61.6
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.6e-134 481.9 556 64.4
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.6e-134 481.9 556 64.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 6.6e-134 481.9 553 60.4
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 8.6e-134 481.5 544 56.2
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 8.6e-134 481.5 581 62.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.9e-133 480.3 544 61.2
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.2e-132 477.6 544 58.1
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.6e-132 477.2 564 55.3
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.1e-132 476.9 550 64.9
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 8.0e-132 474.9 547 59.6
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.0e-131 474.6 546 67.4
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-131 473.8 559 61.4
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 3.0e-131 473.0 531 64.8
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.4e-130 469.5 531 59.1
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.4e-130 469.5 583 62.8
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.4e-130 469.2 554 63.5
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 5.7e-130 468.8 557 54.9
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 5.7e-130 468.8 554 66.4
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 9.8e-130 468.0 545 63.3
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.2e-129 466.8 544 59.7
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 4.9e-129 465.7 551 61.5
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.8e-128 463.8 547 58.3
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 3.2e-128 463.0 570 57.0
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 7.8e-127 458.4 562 61.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.0e-126 458.0 548 59.5
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-125 454.5 549 62.7
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 2.5e-125 453.4 551 58.8
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 9.5e-125 451.4 548 59.9
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-124 451.1 561 60.1
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.7e-124 449.1 541 52.7
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 3.1e-123 446.4 556 59.7
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.2e-122 444.5 546 57.7
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.2e-122 444.5 555 62.9
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.4e-122 442.6 531 59.3
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.2e-121 440.3 547 64.5
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.3e-118 431.0 514 62.8
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 3.0e-118 429.9 546 57.1
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 3.9e-118 429.5 587 57.1
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 3.9e-118 429.5 513 63.2
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.2e-116 424.5 570 51.9
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.2e-116 424.5 507 57.2
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 2.8e-116 423.3 515 59.8
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 4.7e-116 422.5 489 61.8
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 8.1e-116 421.8 534 63.7
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.1e-115 421.4 507 57.0
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.8e-115 420.6 595 50.3
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.7e-113 414.1 556 48.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.7e-113 412.9 578 51.4
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 6.4e-113 412.1 538 54.5
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.4e-112 409.1 362 67.4
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.6e-111 407.5 565 55.6
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.6e-111 406.0 557 47.4
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.0e-110 404.8 498 53.2
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.6e-109 399.1 588 49.3
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.6e-108 397.5 561 59.7
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.6e-108 396.4 502 63.7
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-106 391.3 554 56.7
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 7.6e-106 388.7 571 47.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 3.8e-105 386.3 537 48.4
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-104 384.8 546 54.9
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.2e-103 381.3 549 58.8
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.5e-101 373.6 845 41.4
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 4.0e-99 366.3 468 60.7
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.1e-96 358.2 525 49.7
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.3e-94 351.3 488 53.5
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 9.9e-90 335.1 552 50.4
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.7e-89 334.3 468 56.8
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.8e-89 333.2 579 45.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 6.0e-87 325.9 522 60.9
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.0e-86 325.1 549 43.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 5.6e-85 319.3 546 39.9
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.3e-84 318.2 327 56.9
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 4.8e-84 316.2 559 47.4
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 6.9e-83 312.4 560 40.5
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.9e-82 308.5 546 39.4
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-80 305.1 544 39.2
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-80 304.7 546 39.2
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.4e-80 303.9 560 40.4
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.2e-80 303.5 544 39.2
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 4.2e-80 303.1 550 39.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.5e-80 302.8 539 40.3
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 3.0e-78 297.0 195 73.8
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 3.9e-78 296.6 442 58.4
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.4e-75 288.1 416 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 6.5e-65 252.7 354 50.6
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.8e-62 244.6 369 58.3
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.8e-62 242.3 432 41.9
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.3e-61 240.4 210 55.7
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.6e-55 221.5 290 67.6
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.6e-55 221.5 312 49.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 6.3e-52 209.5 372 56.5
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 3.9e-46 190.3 370 57.8
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.5e-42 177.2 501 33.5
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.2e-40 170.6 223 52.0
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.2e-32 142.9 98 69.4
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.3e-30 137.9 293 39.6
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-29 135.6 235 37.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.2e-29 135.6 180 61.7
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 8.0e-23 112.8 180 65.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.2e-20 104.8 213 55.4
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.8e-19 101.7 136 41.2
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-18 99.0 213 40.8
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.6e-18 98.6 72 70.8
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.7e-17 95.1 113 51.3
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.5e-16 92.0 52 76.9
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.6e-15 88.6 170 41.8
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-14 85.9 100 55.0
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.3e-14 84.7 54 81.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-14 84.3 77 62.3
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-14 84.3 77 62.3
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.8e-14 83.2 91 54.9
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 3.4e-13 80.9 53 64.2
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.4e-13 80.5 68 54.4
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.8e-13 80.1 103 51.5
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.8e-13 80.1 88 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.2e-12 78.2 233 42.1
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.2e-12 78.2 87 54.0
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.4e-12 76.6 75 58.7
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.1e-11 73.9 64 60.9
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.2e-10 72.4 209 32.5
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.7e-10 71.2 64 59.4
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.9e-09 67.4 82 52.4
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.0e-09 67.0 137 28.5
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 5.2e-06 57.0 167 27.5


User provided reference genes

Program Settings