Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.5e-189 666.0 326 100.0
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 9.6e-173 610.1 359 86.6
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.0e-169 600.1 359 85.5
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 5.5e-168 594.3 359 85.0
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 1.6e-167 592.8 372 81.7
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.7e-167 592.0 359 84.4
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.7e-167 592.0 359 85.0
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 1.0e-166 590.1 352 84.7
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.8e-166 589.3 378 81.7
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 2.3e-166 589.0 365 82.7
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 2.3e-166 589.0 382 79.6
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 2.3e-166 589.0 356 85.1
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 9.6e-165 583.6 356 84.6
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.4e-163 579.7 356 83.7
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 6.9e-163 577.4 394 77.2
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 2.6e-162 575.5 353 83.9
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 4.5e-162 574.7 359 81.6
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.3e-161 573.2 354 84.2
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 7.2e-160 567.4 353 83.0
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.1e-157 560.1 353 79.9
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 1.1e-157 560.1 350 80.3
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 5.7e-157 557.8 350 79.4
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.6e-156 556.2 350 82.9
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 3.7e-156 555.1 359 76.9
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 6.3e-156 554.3 358 77.9
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 1.4e-155 553.1 361 77.6
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 2.4e-155 552.4 351 79.2
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 5.3e-155 551.2 358 77.4
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.9e-155 550.8 356 78.7
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 6.9e-155 550.8 356 78.7
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 9.1e-155 550.4 356 78.4
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.5e-154 549.7 359 77.7
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 4.5e-154 548.1 360 77.5
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 4.5e-154 548.1 338 80.8
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 4.5e-154 548.1 358 77.4
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 7.7e-154 547.4 359 77.2
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.0e-153 547.0 357 77.0
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 3.8e-153 545.0 359 77.4
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.1e-152 543.5 358 77.1
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 1.4e-152 543.1 359 76.6
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 1.4e-152 543.1 355 77.2
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.9e-152 542.7 359 75.5
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 1.9e-152 542.7 359 76.6
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 4.2e-152 541.6 359 77.2
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 4.2e-152 541.6 355 77.5
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 2.7e-151 538.9 358 76.3
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 4.6e-151 538.1 361 75.3
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 4.6e-151 538.1 359 75.2
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.1e-151 537.7 346 78.0
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 6.1e-151 537.7 359 75.2
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.1e-151 537.7 360 76.7
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.3e-150 535.8 358 75.1
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 6.7e-150 534.3 344 77.9
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.1e-149 533.5 357 75.1
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.3e-148 530.0 352 76.4
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 2.8e-148 528.9 406 68.2
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 4.8e-148 528.1 373 72.7
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 8.2e-148 527.3 354 76.0
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 4.1e-147 525.0 347 75.2
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.5e-146 523.1 345 75.9
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.5e-146 523.1 345 75.9
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 1.5e-146 523.1 345 76.8
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 1.5e-146 523.1 415 66.0
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 2.6e-146 522.3 389 70.2
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 7.7e-146 520.8 311 85.2
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 1.3e-145 520.0 320 81.2
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 2.2e-145 519.2 359 73.3
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.9e-145 518.8 358 74.0
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 1.1e-144 516.9 338 76.0
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-143 513.5 351 78.6
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.2e-143 513.5 354 78.2
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.1e-143 512.7 330 78.5
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 6.1e-143 511.1 317 78.9
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.8e-142 509.6 349 75.1
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 8.8e-142 507.3 349 73.9
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 5.7e-141 504.6 346 74.0
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.7e-140 503.1 370 70.5
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 1.2e-138 496.9 357 72.3
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.6e-138 495.7 311 80.1
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 5.9e-138 494.6 353 72.2
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 7.7e-138 494.2 414 64.7
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.7e-137 493.0 302 80.5
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 6.7e-134 481.1 368 68.5
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 1.4e-131 473.4 349 71.3
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 2.0e-130 469.5 445 59.1
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 4.5e-130 468.4 352 69.0
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 7.7e-130 467.6 345 69.3
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 8.5e-129 464.2 337 70.6
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.5e-128 462.6 322 73.9
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 6.8e-126 454.5 343 67.1
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.3e-124 450.3 357 66.7
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 8.3e-124 447.6 376 64.4
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 1.6e-122 443.4 347 64.8
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 3.5e-122 442.2 340 69.1
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 3.0e-118 429.1 298 69.5
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.8e-115 419.9 239 87.9
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 1.6e-114 416.8 256 78.1
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.0e-110 404.1 346 63.3
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 6.8e-110 401.4 281 69.0
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.9e-108 396.0 320 64.7
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 4.3e-104 382.1 289 68.5
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 1.2e-103 380.6 322 63.7
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 3.6e-103 379.0 292 67.8
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 4.7e-103 378.6 324 59.3
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 3.4e-101 372.5 237 78.1
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 1.2e-95 354.0 336 56.0
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 4.4e-93 345.5 211 83.9
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 1.3e-92 344.0 228 75.9
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 8.3e-92 341.3 214 79.9
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 9.2e-91 337.8 363 54.8
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.7e-89 333.6 228 76.3
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 1.5e-88 330.5 214 76.2
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 1.5e-88 330.5 214 76.2
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 8.4e-84 314.7 226 72.1
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.1e-82 310.1 402 45.8
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.1e-79 300.1 229 71.2
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 1.3e-63 247.7 220 62.7
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 1.3e-63 247.7 189 68.3
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.4e-59 234.2 132 89.4
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 4.6e-58 229.2 200 62.5
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 5.7e-48 195.7 118 79.7
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 9.7e-48 194.9 115 80.0
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 7.6e-45 185.3 260 47.3
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 6.5e-44 182.2 122 70.5
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 7.9e-42 175.3 342 36.5
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.0e-37 160.6 102 76.5
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 5.9e-37 159.1 95 81.1
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 5.9e-37 159.1 104 80.8
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 7.2e-35 152.1 83 83.1
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.2e-26 124.8 77 80.5
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.1e-18 97.4 74 67.6
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 1.4e-17 94.7 93 57.0
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.7e-15 86.7 76 61.8
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 4.1e-14 83.2 77 58.4
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 8.5e-12 75.5 54 68.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.6e-10 70.1 34 85.3
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.7e-10 69.7 60 61.7
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.0e-09 68.6 56 62.5
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 1.8e-09 67.8 31 93.5
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 6.8e-09 65.9 43 76.7
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 1.2e-08 65.1 38 81.6
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 1.2e-08 65.1 38 81.6
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 7.0e-06 55.8 70 47.1


User provided reference genes

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