Gene: Pp3c27_3320

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c27_3320
  • Transcript Identifier Pp3c27_3320V3.1
  • Gene Type Coding gene
  • Location Chr27 : 1950498-1953592 : negative

Gene Family Information

  • ID HOM05D002849
  • #Genes/#Species 243/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c27_3320V3.1
  • pacid 32951454
  • alias Pp1s54_267V6
  • alias Phypa_109819
  • alias Phpat.027G014600
  • uniprot A9S7T3

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002098
IEA
GOA DatabasetRNA wobble uridine modification
GO:0002098
IEA
InterProtRNA wobble uridine modification
GO:0000302
ISO
PLAZA Integrative Orthologyresponse to reactive oxygen species AT2G44270
GO:0080157
ISO
PLAZA Integrative Orthologyregulation of plant-type cell wall organization or biogenesis AT2G44270
GO:0002143
IBA
GOA DatabasetRNA wobble position uridine thiolation
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0008033
IEA
InterProtRNA processing
GO:0034227
IEA
GOA DatabasetRNA thio-modification
GO:0034227
IEA
InterProtRNA thio-modification
GO:0032447
IEA
GOA Databaseprotein urmylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000049
IBA
IEA
GOA DatabasetRNA binding
GO:0000049
IEA
InterProtRNA binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002144
IBA
GOA Databasecytosolic tRNA wobble base thiouridylase complex
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal
IPR032442 Cytoplasmic tRNA 2-thiolation protein 1, C-terminal
IPR035107 tRNA thiolation protein, TtcA/Ctu1 type
IPR000541 Cytoplasmic tRNA 2-thiolation protein 1
Mapman id Description
16.5.5.1.4.1 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.component CTU1