Gene: Sp5g31310
General Information
Structural Information
- Species Schrenkiella parvula
- Gene Identifier Sp5g31310
- Transcript Identifier Sp5g31310.1
- Gene Type Coding gene
- Location ch5-7 : 1026635-1029081 : negative
Gene Family Information
- ID HOM05D002849
- #Genes/#Species 243/98
- Phylogenetic origin
- ID ORTHO05D007186
- #Genes/#Species 133/90
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- id Sp5g31310.v2.2
- pacid 45097491
Descriptions
- Description KOG2840 - Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0002098 | IEA | InterPro | tRNA wobble uridine modification | |
| GO:0034227 | IEA | InterPro | tRNA thio-modification | |
| GO:0008033 | IEA | InterPro | tRNA processing | |
| GO:0080157 | ISO | PLAZA Integrative Orthology | regulation of plant-type cell wall organization or biogenesis | AT2G44270 |
| GO:0000302 | ISO | PLAZA Integrative Orthology | response to reactive oxygen species | AT2G44270 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000049 | IEA | InterPro | tRNA binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011063 | tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| IPR000541 | Cytoplasmic tRNA 2-thiolation protein 1 |
| IPR035107 | tRNA thiolation protein, TtcA/Ctu1 type |
| IPR032442 | Cytoplasmic tRNA 2-thiolation protein 1, C-terminal |
| Mapman id | Description |
|---|---|
| 16.5.5.1.4.1 | RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.component CTU1 |