Gene: Sopen08g023190

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g023190
  • Transcript Identifier Sopen08g023190.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 62891605-62896186 : negative

Gene Family Information

  • ID HOM05D002849
  • #Genes/#Species 243/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g023190.1

Descriptions

  • Description Encodes ROL5, a repressor of lrx1 mutants that develop aberrant root hairs. ROL5 is a homolog of yeast Ncs6p that affects TOR signaling. The target of rapamycin (TOR) pathway is a major regulator of cell growth in eukaryotes, and inhibition of this pathway by rapamycin reduces cell growth. ROL5 might function as a mitochondrial component of the TOR pathway that influences the plants response to ROS (reactive oxygen species). | repressor of lrx1 (ROL5) | FUNCTIONS IN: ATP binding | INVOLVED IN: response to reactive oxygen species, regulation of plant-type cell wall organization or biogenesis | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold , PP-loop , 2-thiocytidine tRNA biosynthesis protein, TtcA | BEST Arabidopsis thaliana protein match is: 2-thiocytidine tRNA biosynthesis protein, TtcA .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008033
IEA
InterProtRNA processing
GO:0002098
IEA
InterProtRNA wobble uridine modification
GO:0034227
IEA
InterProtRNA thio-modification
GO:0080157
ISO
PLAZA Integrative Orthologyregulation of plant-type cell wall organization or biogenesis AT2G44270
GO:0000302
ISO
PLAZA Integrative Orthologyresponse to reactive oxygen species AT2G44270

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000049
IEA
InterProtRNA binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR035107 tRNA thiolation protein, TtcA/Ctu1 type
IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal
IPR000541 Cytoplasmic tRNA 2-thiolation protein 1
Mapman id Description
16.5.5.1.4.1 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.component CTU1