Gene: PSO675G6932
General Information
Structural Information
- Species Papaver somniferum
- Gene Identifier PSO675G6932
- Transcript Identifier PSO675G6932.01
- Gene Type Coding gene
- Location NC_039358.1 : 81193818-81196992 : negative
Gene Family Information
- ID HOM05D002849
- #Genes/#Species 243/98
- Phylogenetic origin
- ID ORTHO05D007186
- #Genes/#Species 133/90
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid rna-XM_026541416.1
- pid XP_026397201.1
- id gene-LOC113291934
Descriptions
- product cytoplasmic tRNA 2-thiolation protein 1-like, transcript variant X1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0002098 | IEA | InterPro | tRNA wobble uridine modification | |
| GO:0034227 | IEA | InterPro | tRNA thio-modification | |
| GO:0008033 | IEA | InterPro | tRNA processing | |
| GO:0080157 | ISO | PLAZA Integrative Orthology | regulation of plant-type cell wall organization or biogenesis | AT2G44270 |
| GO:0000302 | ISO | PLAZA Integrative Orthology | response to reactive oxygen species | AT2G44270 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000049 | IEA | InterPro | tRNA binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR032442 | Cytoplasmic tRNA 2-thiolation protein 1, C-terminal |
| IPR000541 | Cytoplasmic tRNA 2-thiolation protein 1 |
| IPR011063 | tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal |
| IPR035107 | tRNA thiolation protein, TtcA/Ctu1 type |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| Mapman id | Description |
|---|---|
| 16.5.5.1.4.1 | RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.component CTU1 |