Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.1e-209 731.1 357 100.0
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 2.3e-199 698.7 372 93.5
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 3.3e-198 694.9 382 91.1
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.2e-197 693.0 355 95.8
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.2e-197 693.0 358 95.3
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 8.0e-197 690.3 355 95.2
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 1.8e-196 689.1 358 94.7
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.2e-195 686.4 355 94.4
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 7.5e-195 683.7 365 92.9
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 8.3e-194 680.2 394 87.8
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.8e-193 679.1 357 92.7
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 3.2e-193 678.3 358 92.5
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 2.3e-191 672.2 357 90.8
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 1.5e-190 669.5 357 92.2
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 1.9e-190 669.1 360 93.3
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 3.1e-188 661.8 360 92.2
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 3.7e-186 654.8 355 89.3
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.9e-185 652.5 357 87.4
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 2.4e-185 652.1 378 88.6
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 9.2e-185 650.2 353 88.1
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 3.5e-184 648.3 355 88.2
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 6.0e-184 647.5 354 87.6
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.3e-183 646.4 358 86.3
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 1.7e-183 646.0 357 86.8
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 5.0e-183 644.4 355 87.6
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 5.0e-183 644.4 355 87.6
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.6e-183 644.0 360 86.4
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.6e-183 644.0 355 87.3
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 1.5e-182 642.9 360 86.4
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 3.3e-182 641.7 361 86.1
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 5.6e-182 641.0 359 85.8
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 7.3e-182 640.6 356 86.5
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.1e-180 636.7 357 85.2
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.8e-180 636.0 354 87.0
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 2.3e-180 635.6 358 85.8
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 2.3e-180 635.6 360 84.4
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 4.0e-180 634.8 343 88.0
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 5.2e-180 634.4 358 84.6
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 6.8e-180 634.0 343 87.8
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 8.9e-180 633.6 352 86.1
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 7.5e-179 630.6 358 85.2
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 2.2e-178 629.0 358 84.9
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.9e-178 628.6 357 84.6
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 3.2e-177 625.2 361 84.8
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 3.2e-177 625.2 358 83.0
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 9.2e-177 623.6 360 88.9
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 1.6e-176 622.9 356 84.6
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 3.5e-176 621.7 356 84.3
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.0e-175 620.2 359 83.3
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 1.7e-175 619.4 343 86.9
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 5.1e-175 617.8 344 87.2
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.9e-174 615.9 405 76.3
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 1.9e-174 615.9 412 74.8
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.6e-173 612.8 372 80.4
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.8e-173 612.1 343 85.7
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 2.3e-172 609.0 388 78.4
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 8.9e-172 607.1 343 84.8
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 8.9e-172 607.1 343 84.8
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 1.2e-171 606.7 329 88.8
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.2e-171 606.7 354 82.5
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 2.2e-170 602.4 370 84.6
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 4.9e-170 601.3 354 82.5
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.4e-169 599.7 364 80.8
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.9e-169 599.4 356 82.0
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.4e-169 599.0 334 86.5
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 3.2e-169 598.6 356 82.0
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 4.1e-169 598.2 348 83.6
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.6e-168 596.3 312 93.6
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 1.6e-168 596.3 357 80.1
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 1.6e-168 596.3 349 83.4
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 6.6e-167 590.9 359 85.0
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 4.7e-165 584.7 335 83.3
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 6.2e-165 584.3 343 82.2
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 2.0e-163 579.3 348 81.3
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 5.8e-163 577.8 374 77.0
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.7e-162 576.2 412 70.1
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.4e-161 572.4 327 85.6
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 5.4e-161 571.2 357 78.4
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.2e-160 570.1 350 79.7
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 2.3e-159 565.8 361 82.8
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 6.2e-157 557.8 369 76.2
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.4e-156 556.6 362 81.8
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 9.9e-155 550.4 319 83.1
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 8.4e-154 547.4 345 75.7
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.1e-153 547.0 436 65.1
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 5.1e-151 538.1 316 78.2
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 1.6e-149 533.1 347 74.4
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.1e-149 532.7 333 79.3
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.3e-146 523.5 378 71.7
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 2.2e-146 522.7 354 75.7
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 8.4e-146 520.8 357 74.5
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 3.2e-145 518.8 358 72.3
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 2.5e-142 509.2 343 74.1
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 2.1e-141 506.1 316 74.4
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 4.8e-141 505.0 369 69.9
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 7.4e-134 481.1 310 71.9
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.1e-129 467.2 289 78.5
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 1.0e-127 460.7 256 84.0
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.9e-126 456.4 238 92.9
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 4.8e-125 451.8 355 66.8
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 2.0e-123 446.4 324 64.8
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 4.5e-123 445.3 328 68.3
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 6.7e-119 431.4 354 64.4
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.1e-116 422.5 214 95.8
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 2.0e-115 419.9 231 86.6
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 7.7e-115 417.9 218 91.3
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 7.7e-115 417.9 332 61.4
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.1e-113 414.1 237 84.0
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 9.4e-113 411.0 321 67.3
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 1.8e-111 406.8 227 85.5
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 1.8e-111 406.8 227 85.5
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 6.7e-111 404.8 231 85.7
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.7e-106 390.2 354 60.5
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 2.9e-106 389.4 230 82.6
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.4e-100 369.8 232 79.3
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.0e-99 366.7 420 48.3
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 1.0e-82 311.2 224 71.9
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 6.8e-71 271.9 202 68.8
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 5.6e-65 252.3 210 61.4
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.6e-64 250.8 129 94.6
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 5.1e-58 229.2 269 50.9
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 1.6e-56 224.2 358 39.9
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 2.5e-49 200.3 116 80.2
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 8.1e-48 195.3 114 79.8
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.3e-45 188.0 122 73.0
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.8e-40 169.5 121 73.6
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.6e-38 163.7 101 78.2
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 5.8e-38 162.5 94 83.0
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 2.7e-35 153.7 83 84.3
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 3.5e-27 126.7 77 81.8
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.8e-26 124.4 74 81.1
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.0e-23 113.2 77 71.4
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 1.6e-19 101.3 70 68.6
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 2.7e-19 100.5 93 62.4
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 8.7e-18 95.5 75 64.0
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.5e-17 94.7 57 75.4
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.3e-16 89.4 60 71.7
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 2.0e-14 84.3 77 59.7
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 4.2e-12 76.6 54 70.4
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.9e-10 70.1 34 85.3
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 3.3e-09 67.0 44 75.0
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 4.3e-09 66.6 31 90.3
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 1.3e-08 65.1 38 81.6
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 1.3e-08 65.1 38 81.6


User provided reference genes

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