Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 3.7e-244 847.8 442 100.0
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 2.9e-220 768.5 444 91.9
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 1.7e-217 759.2 457 87.5
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 6.6e-217 757.3 444 90.8
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 1.2e-213 746.5 457 86.2
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 1.5e-213 746.1 445 89.4
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 3.4e-213 745.0 452 88.7
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 3.9e-209 731.5 445 85.4
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 9.6e-200 700.3 445 85.2
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 6.9e-198 694.1 445 83.8
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 2.4e-174 615.9 481 73.0
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 2.5e-171 605.9 465 72.5
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 1.3e-143 513.8 481 59.9
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.8e-143 512.7 480 59.6
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 6.3e-143 511.5 480 59.2
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 1.1e-142 510.8 454 63.9
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 3.5e-141 505.8 450 60.4
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.9e-141 505.0 460 60.7
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.2e-140 503.1 480 58.5
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 1.9e-139 500.0 444 61.7
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 5.5e-139 498.4 453 59.6
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 5.5e-139 498.4 449 60.8
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 5.5e-139 498.4 448 61.2
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 1.2e-138 497.3 433 63.3
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 1.4e-137 493.8 435 60.5
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 3.0e-137 492.7 487 57.5
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 8.8e-137 491.1 449 59.0
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 1.2e-136 490.7 433 59.6
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 1.5e-136 490.3 480 56.7
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 6.3e-135 485.0 452 58.4
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.4e-134 483.8 449 59.7
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.8e-134 483.4 437 58.8
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 3.1e-134 482.6 449 58.1
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 3.1e-134 482.6 438 61.2
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 5.4e-134 481.9 477 56.4
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 9.1e-134 481.1 440 58.9
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.7e-133 479.6 444 56.8
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 2.7e-133 479.6 480 56.9
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 3.5e-133 479.2 460 57.0
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.5e-133 478.8 445 57.5
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 4.5e-133 478.8 450 59.6
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 1.3e-132 477.2 448 58.3
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.7e-132 476.9 448 57.6
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 1.7e-132 476.9 429 59.9
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 5.0e-132 475.3 432 58.8
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 6.6e-132 474.9 433 59.6
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 8.6e-132 474.6 430 59.3
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 3.3e-131 472.6 440 58.4
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 4.2e-131 472.2 447 57.9
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 7.2e-131 471.5 459 58.4
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 9.5e-131 471.1 445 58.0
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.2e-130 470.7 443 57.6
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 1.6e-130 470.3 479 56.4
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 6.1e-130 468.4 441 58.3
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.4e-128 462.2 448 58.3
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 4.4e-128 462.2 418 59.3
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 4.9e-127 458.8 478 54.2
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 8.3e-127 458.0 454 57.7
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 4.1e-126 455.7 425 60.5
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 5.9e-125 451.8 428 57.0
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 1.3e-124 450.7 438 54.8
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 2.3e-124 449.9 450 57.1
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 2.9e-124 449.5 424 58.3
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 6.6e-124 448.4 431 58.0
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 3.3e-123 446.0 431 54.8
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 5.6e-123 445.3 431 59.4
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 7.3e-123 444.9 438 55.5
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 7.3e-123 444.9 454 52.6
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.6e-122 443.7 453 52.3
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 4.7e-122 442.2 432 57.4
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 1.8e-121 440.3 259 88.8
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 5.2e-121 438.7 422 56.6
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 6.8e-121 438.3 432 55.1
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 8.9e-121 438.0 439 56.3
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 1.2e-120 437.6 432 56.7
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 6.4e-119 431.8 435 55.6
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 8.3e-119 431.4 455 53.6
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.2e-117 427.6 438 55.9
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.2e-117 427.6 420 56.9
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 1.3e-116 424.1 482 51.7
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 1.2e-114 417.5 465 52.9
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 8.9e-113 411.4 476 52.5
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 2.2e-111 406.8 435 52.2
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 5.2e-105 385.6 421 52.5
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 2.4e-102 376.7 430 51.6
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 2.4e-102 376.7 374 56.4
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 5.4e-102 375.6 604 42.4
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 1.2e-101 374.4 329 61.4
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.3e-100 370.9 369 56.4
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 3.9e-100 369.4 381 53.8
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 1.4e-97 360.9 337 58.8
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 2.2e-95 353.6 326 57.1
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 5.4e-94 349.0 196 90.3
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 3.5e-93 346.3 348 56.6
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 7.8e-93 345.1 324 57.7
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 1.2e-88 331.3 306 59.5
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 2.4e-86 323.6 377 49.6
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 1.2e-85 321.2 383 50.7
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.3e-74 284.6 390 45.9
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.4e-73 281.2 204 68.6
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 5.3e-73 279.3 311 52.1
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.2e-72 278.1 356 48.6
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.0e-71 275.0 263 57.8
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-62 245.0 399 40.4
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 9.7e-51 205.3 599 31.2
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 1.2e-48 198.4 275 44.4
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.2e-45 188.3 320 41.9
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.5e-43 181.4 369 36.0
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 7.0e-41 172.6 98 82.7
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 6.5e-39 166.0 97 80.4
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 3.2e-38 163.7 101 78.2
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.0e-36 158.7 250 44.4
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.2e-36 156.4 160 56.2
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 1.6e-29 134.8 180 47.2
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.5e-27 128.3 130 53.8
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.2e-23 114.4 97 59.8
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.2e-23 114.4 177 43.5
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 2.1e-21 107.8 111 57.7
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 8.8e-20 102.4 324 30.2
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 9.8e-19 99.0 112 48.2
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 8.3e-18 95.9 54 81.5
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 7.7e-16 89.4 120 49.2
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 1.3e-15 88.6 141 42.6
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 3.8e-15 87.0 49 87.8
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 3.8e-15 87.0 49 87.8
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 3.8e-15 87.0 44 86.4
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.5e-14 84.3 135 41.5
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 8.9e-12 75.9 83 45.8
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 4.4e-11 73.6 52 65.4
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 3.7e-10 70.5 49 63.3
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 1.1e-09 68.9 56 58.9
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 8.6e-07 59.3 41 70.7
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 2.5e-06 57.8 82 45.1
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 4.3e-06 57.0 55 52.7
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 4.3e-06 57.0 112 40.2


User provided reference genes

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