Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.3e-182 642.9 319 100.0
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.8e-131 473.0 364 71.7
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 2.3e-131 472.6 370 69.2
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.2e-130 470.3 359 70.2
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.4e-128 463.4 361 69.5
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 3.0e-126 455.7 355 68.7
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.8e-123 446.4 397 62.7
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 1.2e-122 443.7 363 66.1
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 5.6e-117 424.9 363 63.1
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 8.4e-113 411.0 307 69.7
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 3.1e-107 392.5 340 62.1
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 6.9e-107 391.3 347 60.5
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.2e-106 390.6 348 60.1
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 4.9e-105 385.2 350 59.1
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 4.2e-104 382.1 379 55.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.1e-101 374.0 346 58.7
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 6.2e-100 368.2 346 57.5
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.7e-97 360.1 347 57.3
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 3.8e-97 359.0 358 55.9
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 5.5e-96 355.1 358 55.9
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 4.6e-95 352.1 370 55.1
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 1.3e-94 350.5 357 54.3
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 2.3e-94 349.7 375 54.7
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 8.2e-92 341.3 365 53.2
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 3.9e-86 322.4 310 55.2
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 1.1e-85 320.9 351 52.7
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.5e-85 320.5 357 51.8
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 9.7e-85 317.8 345 50.4
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 4.8e-84 315.5 337 51.9
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.4e-83 313.9 354 50.3
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 5.3e-83 312.0 331 52.9
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 2.6e-82 309.7 358 48.9
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 3.4e-82 309.3 344 52.3
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 1.3e-81 307.4 349 51.3
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 2.2e-81 306.6 361 48.5
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 5.0e-81 305.4 345 49.6
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 2.5e-80 303.1 356 47.2
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 3.2e-80 302.8 345 49.6
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 4.2e-80 302.4 353 50.1
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 9.4e-80 301.2 317 51.7
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 7.9e-79 298.1 349 49.3
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 3.0e-78 296.2 359 47.9
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 5.1e-78 295.4 339 47.8
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 5.1e-78 295.4 353 47.6
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 6.7e-78 295.0 350 46.9
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 8.8e-78 294.7 331 49.8
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 1.5e-77 293.9 334 49.1
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 2.0e-77 293.5 347 47.6
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 4.3e-77 292.4 237 60.3
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 7.4e-77 291.6 360 48.1
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 7.4e-77 291.6 360 46.9
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 9.7e-77 291.2 354 48.6
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.3e-76 290.8 367 48.0
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.2e-76 290.0 277 53.4
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 4.8e-76 288.9 276 54.0
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 4.8e-76 288.9 355 47.9
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.1e-75 287.7 377 45.4
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.1e-75 287.7 321 48.3
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 1.8e-75 287.0 244 59.0
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.8e-75 287.0 364 46.4
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.8e-75 287.0 285 52.3
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.4e-75 286.6 281 54.4
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 2.4e-75 286.6 331 48.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 3.1e-75 286.2 285 52.3
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 4.1e-75 285.8 354 45.8
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 4.1e-75 285.8 354 48.3
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 9.1e-75 284.6 345 46.7
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 1.2e-74 284.3 348 45.4
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 1.2e-74 284.3 277 53.8
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 2.0e-74 283.5 347 46.7
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 4.5e-74 282.3 274 53.3
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 5.9e-74 282.0 247 55.9
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 1.3e-73 280.8 326 48.5
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.7e-73 280.4 357 47.9
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 6.5e-73 278.5 359 46.2
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 8.5e-73 278.1 285 51.6
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.9e-72 276.9 376 44.4
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 9.4e-72 274.6 405 44.0
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.7e-71 273.1 300 49.0
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 2.7e-71 273.1 257 53.7
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 4.7e-71 272.3 346 46.2
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 2.3e-70 270.0 346 47.4
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 5.1e-70 268.9 323 47.4
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 8.8e-70 268.1 283 49.8
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 2.6e-69 266.5 326 46.3
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 3.3e-69 266.2 327 45.6
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.1e-67 261.2 275 51.3
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.4e-67 260.0 312 46.8
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.2e-66 257.7 352 42.3
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 1.0e-65 254.6 251 52.2
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 1.3e-65 254.2 357 43.7
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.7e-65 253.8 367 41.7
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.7e-65 253.8 345 43.8
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 3.8e-65 252.7 360 43.9
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 1.5e-64 250.8 242 53.7
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 1.9e-64 250.4 314 45.5
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 4.2e-64 249.2 236 51.7
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 4.2e-64 249.2 297 47.1
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.2e-63 247.7 313 46.0
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.6e-63 247.3 231 56.7
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.6e-63 247.3 313 45.7
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 2.7e-63 246.5 242 52.1
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 2.7e-63 246.5 368 43.2
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 4.7e-63 245.7 365 43.8
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.1e-61 241.1 344 43.0
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.6e-61 240.0 230 51.7
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.3e-61 239.6 173 68.8
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.7e-60 237.3 301 45.5
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 4.8e-60 235.7 323 42.7
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.3e-60 235.3 313 44.4
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 3.1e-59 233.0 232 51.7
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.7e-58 229.9 332 45.5
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 6.5e-57 225.3 240 48.8
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 8.5e-57 224.9 217 52.1
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.2e-55 221.1 331 40.2
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 8.0e-55 218.4 209 51.7
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 2.3e-54 216.9 246 46.3
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 4.0e-54 216.1 241 46.1
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 2.9e-49 199.9 253 43.9
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 2.9e-49 199.9 177 55.4
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.9e-49 199.9 237 45.1
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 8.5e-49 198.4 172 56.4
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 2.0e-45 187.2 176 54.5
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.3e-44 184.5 291 40.9
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.7e-44 184.1 172 52.3
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 2.2e-44 183.7 259 42.9
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 1.1e-43 181.4 179 50.8
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.8e-41 172.9 93 79.6
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 2.8e-39 166.8 92 79.3
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.5e-37 161.0 90 74.4
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.6e-33 145.6 216 43.5
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 1.1e-32 144.8 237 37.1
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 6.8e-30 135.6 92 66.3
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 2.0e-29 134.0 253 32.0
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 7.0e-27 125.6 232 32.8
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 1.6e-23 114.4 222 34.7
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.1e-23 114.0 69 73.9
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 2.3e-22 110.5 62 79.0
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 1.3e-20 104.8 58 79.3
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 2.9e-20 103.6 104 54.8
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.2e-19 100.1 179 43.0
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 4.1e-19 99.8 164 40.2
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 4.1e-19 99.8 97 51.5
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 2.7e-18 97.1 54 88.9
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 4.6e-18 96.3 293 28.3
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 7.8e-18 95.5 140 44.3
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 3.0e-17 93.6 69 65.2
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.3e-16 90.1 92 48.9
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 2.3e-14 84.0 68 58.8
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.3e-12 78.2 80 52.5
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 7.1e-11 72.4 102 43.1
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 5.1e-09 66.2 58 55.2
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 1.9e-08 64.3 242 27.7
BcaB06g26843 Brassica carinata HOM05D000927 ORTHO05D000850 1.8e-06 57.8 71 62.0
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 2.4e-06 57.4 143 33.6


User provided reference genes

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