Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 0.0e+00 1331.2 665 100.0
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 0.0e+00 1294.3 665 97.1
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 0.0e+00 1252.3 665 94.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 0.0e+00 1186.4 661 89.1
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 0.0e+00 1114.8 657 83.9
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 0.0e+00 1100.9 663 83.6
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 0.0e+00 1087.8 689 80.0
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 2.8e-272 941.8 662 69.9
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 3.5e-262 908.3 662 67.1
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.5e-260 902.1 662 67.2
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.5e-260 902.1 662 67.2
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 4.3e-260 901.4 663 67.3
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 8.9e-258 893.6 659 65.9
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 4.4e-257 891.3 661 66.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 5.8e-257 891.0 661 64.4
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 2.3e-253 879.0 651 64.8
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 3.0e-253 878.6 650 65.1
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 1.9e-252 875.9 662 65.4
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 3.3e-252 875.2 660 65.0
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 2.1e-251 872.5 662 64.8
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 8.9e-250 867.1 661 64.3
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 3.4e-249 865.1 653 64.9
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 5.8e-249 864.4 658 65.2
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 3.7e-248 861.7 665 63.8
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.1e-247 860.1 653 64.0
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.4e-247 859.8 657 63.9
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 9.2e-247 857.1 664 64.2
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 4.7e-243 844.7 660 61.1
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.8e-242 842.8 662 63.4
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 2.6e-241 839.0 662 63.1
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 3.4e-241 838.6 661 61.3
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 7.6e-241 837.4 653 63.1
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 1.3e-240 836.6 662 62.4
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 1.7e-240 836.3 661 61.3
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 8.4e-240 833.9 663 61.8
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 8.4e-240 833.9 663 62.6
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.6e-238 829.7 619 63.8
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.1e-238 829.3 663 62.3
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 6.6e-237 824.3 659 60.4
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.3e-236 822.0 662 59.7
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 7.3e-236 820.8 633 61.3
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 9.6e-236 820.5 649 61.3
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.6e-235 818.5 647 60.9
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 6.2e-235 817.8 654 60.9
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 1.4e-234 816.6 657 60.9
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 6.9e-234 814.3 656 61.0
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.4e-233 812.0 633 60.7
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 4.9e-232 808.1 650 60.6
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 4.9e-232 808.1 658 59.9
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.4e-232 807.7 584 67.8
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 2.4e-231 805.8 649 59.2
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.6e-230 803.1 643 60.7
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 3.5e-230 802.0 655 58.8
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 6.0e-230 801.2 659 60.8
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.7e-229 799.7 660 60.3
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.1e-228 797.0 648 59.7
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 2.5e-228 795.8 653 59.3
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 3.6e-227 792.0 650 58.6
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 8.1e-227 790.8 665 56.1
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 8.1e-227 790.8 649 58.2
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.1e-226 790.4 626 58.9
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.8e-226 789.6 648 61.7
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 1.8e-226 789.6 650 59.5
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 4.0e-226 788.5 650 57.8
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 4.0e-226 788.5 649 58.2
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 4.5e-225 785.0 662 59.2
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 5.8e-225 784.6 662 59.5
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 7.6e-225 784.3 649 57.5
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.2e-224 782.7 626 58.6
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 8.4e-224 780.8 659 57.5
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 2.4e-223 779.2 649 57.3
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.2e-222 776.9 626 59.3
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 1.0e-221 773.9 626 58.3
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.3e-221 773.5 649 57.0
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.8e-221 773.1 655 56.5
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 3.0e-221 772.3 626 58.0
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 3.0e-221 772.3 626 58.0
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 3.0e-221 772.3 626 58.0
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 8.7e-221 770.8 651 56.7
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 8.1e-219 764.2 620 57.6
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 2.4e-218 762.7 648 56.3
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.7e-216 756.5 626 56.7
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 8.4e-216 754.2 655 55.6
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 1.1e-215 753.8 650 56.9
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.9e-214 747.7 621 59.3
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.5e-212 742.7 667 55.0
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 7.6e-209 731.1 631 55.8
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 4.9e-208 728.4 667 52.9
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 9.0e-202 707.6 549 62.8
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.6e-198 696.8 634 52.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.6e-198 695.3 573 57.6
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 4.3e-196 688.7 655 52.7
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.1e-194 684.1 633 52.4
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 5.9e-193 678.3 621 52.8
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.4e-191 673.7 610 54.8
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.4e-186 657.1 527 63.0
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.5e-167 594.0 659 49.0
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 3.8e-160 569.3 649 44.8
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 4.5e-153 545.8 468 59.4
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.9e-144 516.2 411 61.6
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 8.6e-144 515.0 601 45.1
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.2e-140 504.6 649 42.5
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 2.7e-121 440.3 325 61.2
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 6.7e-104 382.5 441 47.2
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.9e-99 366.3 386 51.3
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 5.3e-93 346.3 337 55.2
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 2.8e-86 323.9 441 43.5
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.3e-79 300.4 641 30.7
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 4.5e-68 263.5 249 55.8
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 3.8e-67 260.4 225 56.9
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.1e-65 254.6 224 57.1
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.1e-63 248.8 675 27.3
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.8e-61 241.5 622 27.7
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.3e-59 235.3 637 26.2
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 6.5e-51 206.5 640 25.8
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.4e-37 161.4 91 78.0
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.7e-33 147.1 674 23.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 3.0e-27 127.9 200 38.0
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 6.6e-27 126.7 71 77.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 8.3e-22 109.8 60 75.0
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 8.4e-14 83.2 235 26.0
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.1e-13 82.8 670 18.8
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 5.2e-08 63.9 57 56.1
Sc19g0008130 Simmondsia chinensis HOM05D002649 ORTHO05D002838 4.4e-07 60.8 238 26.5
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 9.9e-07 59.7 201 27.4
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 2.2e-06 58.5 205 25.4
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 4.9e-06 57.4 35 65.7
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 6.4e-06 57.0 203 26.6
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 6.4e-06 57.0 144 27.8
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 6.4e-06 57.0 342 20.2
Thecc.07G190000 Theobroma cacao HOM05D000001 ORTHO05D000003 6.4e-06 57.0 236 22.9


User provided reference genes

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