Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.0e-267 926.4 538 100.0
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.2e-242 841.6 501 99.0
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 6.1e-241 837.4 502 99.0
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.9e-235 818.5 523 90.6
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 9.2e-213 743.8 542 84.1
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.6e-212 743.0 523 84.5
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 8.9e-200 700.7 536 78.0
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 6.4e-190 667.9 539 72.4
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 3.2e-189 665.6 539 72.9
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 3.9e-187 658.7 537 73.6
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 3.9e-187 658.7 541 73.0
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 3.3e-186 655.6 484 80.4
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.0e-183 646.4 543 70.0
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 7.9e-180 634.4 541 69.7
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 5.1e-179 631.7 543 70.5
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 5.1e-179 631.7 541 70.4
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.9e-178 629.8 549 69.8
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.5e-178 629.4 543 68.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.3e-178 629.0 541 69.3
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.7e-174 616.7 541 68.6
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.8e-174 615.5 541 68.2
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 1.4e-173 613.6 542 68.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.5e-173 612.8 539 69.9
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 7.1e-173 611.3 540 69.6
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 2.1e-172 609.8 553 67.1
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 3.5e-172 609.0 547 67.5
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 6.0e-172 608.2 539 69.6
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.0e-171 607.4 542 67.7
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.3e-171 606.3 539 67.9
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 4.3e-170 602.1 542 67.3
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.1e-169 599.7 541 67.7
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.7e-169 599.0 541 67.3
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 6.2e-169 598.2 523 69.6
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 3.1e-168 595.9 552 66.1
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 5.3e-168 595.1 544 67.8
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 9.0e-168 594.3 543 66.9
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.5e-167 593.6 572 64.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.8e-167 591.7 539 67.3
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-166 590.5 586 63.8
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-166 590.5 586 63.8
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 6.5e-166 588.2 540 67.8
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.2e-164 583.9 545 66.2
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.7e-164 582.8 541 65.8
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 6.7e-163 578.2 539 66.6
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 4.8e-161 572.0 543 65.9
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.4e-160 570.5 546 70.1
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.5e-159 567.0 563 65.4
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.0e-158 564.3 536 67.0
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.3e-158 563.9 540 64.1
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 5.0e-158 562.0 539 65.9
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 3.2e-157 559.3 534 68.0
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.6e-156 557.0 540 63.9
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.1e-156 556.6 542 64.8
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.9e-155 552.4 552 63.4
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 8.8e-155 551.2 554 62.6
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.0e-154 550.1 359 81.1
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 5.7e-154 548.5 540 65.0
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 2.2e-153 546.6 550 60.2
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.7e-153 545.8 543 64.8
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 6.3e-153 545.0 556 62.9
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 6.3e-153 545.0 551 63.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.1e-152 542.3 551 65.0
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.0e-151 540.0 551 65.0
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.8e-150 535.8 490 65.5
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 3.8e-150 535.8 559 62.1
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 2.5e-149 533.1 512 67.2
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.2e-149 532.7 540 64.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.2e-148 530.8 551 64.2
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.1e-148 530.0 546 63.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.0e-147 527.7 537 59.8
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 5.1e-147 525.4 541 60.1
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.1e-146 524.2 563 61.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.7e-145 520.4 526 67.5
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.2e-145 518.1 546 58.1
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.1e-144 515.8 567 57.3
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.0e-143 513.5 545 62.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.6e-143 513.1 540 62.0
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.0e-142 511.1 547 62.2
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 3.8e-142 509.2 835 44.7
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.9e-141 506.9 534 58.6
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.9e-139 499.2 552 58.2
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 4.4e-138 495.7 558 59.5
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.3e-137 494.2 542 60.0
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.8e-137 493.0 546 60.4
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 6.3e-137 491.9 570 55.3
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 5.3e-136 488.8 543 59.1
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 7.0e-136 488.4 580 55.9
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.0e-134 482.3 583 54.2
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.1e-133 481.1 542 59.8
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.9e-133 480.3 543 59.7
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 9.4e-133 478.0 545 59.4
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 9.4e-133 478.0 545 59.4
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.7e-132 476.5 532 58.3
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.7e-132 476.5 511 60.1
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 8.0e-132 474.9 543 59.3
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 1.8e-131 473.8 545 58.9
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 3.0e-131 473.0 547 53.6
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 8.8e-131 471.5 544 59.4
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-130 471.1 576 56.6
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.2e-130 471.1 547 60.0
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 5.7e-130 468.8 541 59.9
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 7.0e-128 461.8 544 57.9
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.1e-128 461.5 520 57.3
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.2e-127 461.1 511 61.3
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.0e-126 458.0 545 54.3
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-126 457.6 531 61.4
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 6.5e-126 455.3 462 65.6
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 4.2e-125 452.6 499 63.7
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 2.3e-123 446.8 544 58.1
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 3.0e-123 446.4 558 54.8
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 6.8e-123 445.3 536 57.6
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.6e-122 443.4 544 59.7
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.1e-120 436.4 574 51.9
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.0e-118 431.4 482 60.2
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 3.3e-117 426.4 536 56.2
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 3.3e-117 426.4 536 56.2
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 3.3e-117 426.4 551 54.8
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.8e-116 423.3 466 63.3
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.3e-110 404.4 547 54.3
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.2e-108 397.9 542 48.7
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 2.8e-108 396.7 411 65.7
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 8.9e-107 391.7 324 64.8
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 4.6e-103 379.4 539 47.1
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.9e-101 374.0 553 50.1
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.1e-99 368.2 548 50.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 6.8e-99 365.5 559 49.0
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.5e-95 353.2 362 68.0
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 6.0e-95 352.4 439 56.3
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.6e-92 343.2 550 43.3
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.0e-91 339.7 536 47.9
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-90 338.2 544 46.9
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.6e-90 337.0 536 47.8
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 4.4e-90 336.3 544 46.3
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 9.9e-90 335.1 425 53.4
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.2e-89 334.0 550 43.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.4e-89 332.0 548 46.4
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.3e-86 324.7 517 49.5
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.0e-83 313.2 354 51.4
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.2e-82 311.6 319 67.1
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 3.8e-81 306.6 309 63.4
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 2.7e-79 300.4 361 64.3
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 1.6e-76 291.2 195 72.3
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.0e-67 258.8 312 48.4
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 6.0e-63 246.1 346 51.7
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 3.9e-62 243.4 365 54.5
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.9e-56 224.6 224 64.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.5e-48 196.4 505 36.4
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 9.7e-45 185.7 176 71.0
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.0e-41 175.6 165 65.5
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-36 157.1 242 45.9
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.2e-33 147.9 101 68.3
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.7e-28 131.7 102 80.4
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.0e-26 124.8 313 33.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 2.9e-25 120.9 267 37.1
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 4.7e-23 113.6 213 43.7
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 8.0e-23 112.8 140 41.4
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 3.3e-21 107.5 149 51.7
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.2e-20 104.8 208 49.0
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.7e-20 104.0 99 67.7
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 3.1e-19 100.9 58 82.8
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 4.1e-19 100.5 73 69.9
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.5e-18 97.4 101 67.3
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-15 88.6 115 50.4
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-15 87.4 95 55.8
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 6.1e-15 86.7 80 53.8
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-14 85.9 71 62.0
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-14 85.9 71 62.0
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.8e-14 85.1 108 53.7
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 5.2e-14 83.6 54 63.0
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.4e-13 80.9 239 32.6
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.0e-09 69.3 130 28.5
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.7e-09 68.6 228 32.9
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.9e-09 67.8 53 62.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 5.0e-09 67.0 79 49.4
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.0e-09 67.0 223 38.6
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 6.5e-09 66.6 64 56.2
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.1e-08 65.9 89 46.1
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 1.6e-07 62.0 135 40.7
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 5.2e-06 57.0 116 35.3


User provided reference genes

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