Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 2.2e-213 745.3 379 100.0
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.2e-208 728.8 381 98.2
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 4.1e-175 618.2 387 81.9
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 2.4e-167 592.4 348 87.1
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.9e-151 539.7 386 74.6
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.1e-148 530.4 381 74.3
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 1.9e-140 503.1 362 71.0
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 2.1e-134 483.0 380 67.4
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 6.9e-130 468.0 356 70.2
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 9.9e-129 464.2 363 66.7
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 2.2e-128 463.0 359 67.4
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 6.4e-128 461.5 381 64.6
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 1.1e-127 460.7 357 67.8
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 1.2e-126 457.2 387 62.8
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 4.6e-126 455.3 368 66.0
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.3e-125 453.8 365 65.2
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.8e-125 453.4 360 65.0
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 5.1e-125 451.8 362 66.6
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 1.5e-124 450.3 374 63.1
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.5e-124 449.5 409 60.1
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 5.6e-124 448.4 382 64.1
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 5.6e-124 448.4 360 64.7
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.6e-123 446.8 325 68.6
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 2.8e-123 446.0 361 65.1
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.4e-122 443.7 328 70.4
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 5.8e-121 438.3 374 64.4
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.4e-119 433.7 371 63.6
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 4.2e-119 432.2 382 62.0
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 9.3e-119 431.0 435 56.6
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 7.9e-118 427.9 366 62.8
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 7.9e-118 427.9 366 62.8
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 2.3e-117 426.4 328 67.4
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 5.1e-117 425.2 360 62.5
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 8.7e-117 424.5 351 65.0
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 3.3e-116 422.5 357 63.6
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 3.3e-116 422.5 334 64.4
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 4.3e-116 422.2 365 62.5
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 2.1e-115 419.9 353 63.2
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.8e-115 419.5 290 73.4
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 6.2e-115 418.3 361 62.0
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 8.2e-115 417.9 353 62.3
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.4e-114 417.2 244 82.0
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 4.0e-114 415.6 343 63.6
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.5e-113 413.7 390 59.2
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 2.6e-113 412.9 379 58.8
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.4e-113 412.5 526 47.5
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 7.6e-113 411.4 241 81.7
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 1.7e-112 410.2 356 62.4
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.8e-112 409.1 360 59.7
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 4.9e-112 408.7 374 59.6
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 6.5e-112 408.3 374 59.9
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 8.4e-112 407.9 367 59.1
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 8.4e-112 407.9 355 61.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.4e-111 407.1 359 59.3
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 1.4e-111 407.1 360 60.0
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 1.9e-111 406.8 289 69.9
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.5e-111 406.4 349 61.0
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 2.5e-111 406.4 324 64.8
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 9.3e-111 404.4 375 58.9
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 3.5e-110 402.5 376 59.6
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 4.6e-110 402.1 333 62.8
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.6e-110 402.1 338 61.8
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 7.9e-110 401.4 365 58.9
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 1.3e-109 400.6 362 58.8
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 2.3e-109 399.8 383 56.1
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 3.0e-109 399.4 368 59.8
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 6.7e-109 398.3 332 63.0
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.1e-108 397.5 240 80.4
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 3.3e-108 396.0 248 77.8
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 4.3e-108 395.6 357 59.1
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 7.4e-108 394.8 372 57.5
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 9.7e-108 394.4 304 67.4
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 1.3e-107 394.0 349 59.6
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 2.2e-107 393.3 377 56.8
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 8.2e-107 391.3 362 59.4
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 8.2e-107 391.3 342 60.8
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.1e-106 391.0 378 56.9
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 1.4e-106 390.6 369 56.6
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 5.3e-106 388.7 324 61.7
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 5.3e-106 388.7 381 57.5
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 3.4e-105 386.0 329 62.3
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 4.5e-105 385.6 297 66.0
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 7.6e-105 384.8 406 54.7
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.7e-104 383.6 335 60.0
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.9e-104 382.9 329 62.3
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 5.0e-104 382.1 349 58.7
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 6.5e-104 381.7 366 58.2
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.4e-103 380.6 361 55.7
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 2.5e-103 379.8 325 59.7
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 4.2e-103 379.0 359 58.8
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 4.2e-103 379.0 349 59.0
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.2e-102 377.5 290 64.1
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 2.1e-102 376.7 356 57.9
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 6.1e-102 375.2 359 55.7
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.0e-101 374.4 354 56.8
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.9e-101 372.5 381 56.4
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 6.7e-101 371.7 367 56.1
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 4.3e-100 369.0 371 55.0
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 1.1e-98 364.4 252 69.0
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 9.1e-98 361.3 242 72.3
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 5.9e-97 358.6 310 61.3
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 5.9e-97 358.6 330 58.5
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.0e-96 357.8 324 56.5
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 1.4e-95 354.0 242 70.2
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.4e-93 347.4 241 70.5
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 2.3e-93 346.7 238 70.2
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 2.0e-92 343.6 196 82.1
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 2.0e-92 343.6 255 68.2
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 4.4e-92 342.4 285 62.1
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 4.4e-92 342.4 292 61.0
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.2e-91 340.1 271 63.8
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 2.8e-91 339.7 376 53.5
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 3.4e-89 332.8 293 62.5
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 2.7e-86 323.2 226 68.6
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 6.1e-86 322.0 180 84.4
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.4e-85 320.9 323 53.6
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 5.2e-85 318.9 186 81.2
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 6.7e-85 318.5 261 60.2
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 1.4e-82 310.8 245 63.7
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.4e-82 310.1 173 91.3
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 1.3e-80 304.3 185 78.9
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 3.2e-79 299.7 169 84.6
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 8.0e-78 295.0 253 60.1
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.3e-77 293.5 247 59.9
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.5e-76 290.8 178 76.4
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.8e-74 283.9 179 75.4
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.4e-74 283.5 354 48.3
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 5.9e-73 278.9 243 58.4
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 8.3e-67 258.5 259 56.8
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.8e-64 249.6 131 86.3
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 1.8e-58 230.7 229 50.2
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.3e-56 224.6 108 98.1
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 1.6e-49 201.1 233 49.4
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 6.0e-49 199.1 275 41.1
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 2.8e-46 190.3 245 43.3
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.1e-45 186.8 114 74.6
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 3.0e-40 170.2 216 45.8
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 5.1e-40 169.5 104 76.9
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.4e-34 151.4 147 56.5
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 2.7e-33 147.1 99 72.7
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 5.6e-31 139.4 75 84.0
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 4.0e-29 133.3 256 36.3
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 2.2e-27 127.5 98 62.2
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 5.4e-26 122.9 115 59.1
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 3.9e-24 116.7 69 76.8
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 7.3e-23 112.5 68 75.0
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 7.3e-23 112.5 199 40.2
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 4.0e-21 106.7 93 59.1
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 9.0e-21 105.5 154 40.3
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 3.4e-20 103.6 303 31.0
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 4.4e-20 103.2 92 56.5
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.2e-18 97.1 58 81.0
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.9e-15 87.8 140 34.3
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.8e-14 84.0 60 63.3
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 6.2e-14 82.8 190 28.9
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 4.0e-13 80.1 115 40.9
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 9.0e-13 79.0 158 36.1
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 4.5e-12 76.6 188 32.4
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 9.9e-12 75.5 63 58.7
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 1.7e-11 74.7 164 29.3
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.2e-09 68.6 211 27.0
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 1.6e-09 68.2 37 83.8
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 7.9e-09 65.9 211 28.0
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 2.3e-08 64.3 275 26.5
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 8.7e-08 62.4 185 29.2
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 1.1e-07 62.0 208 27.9
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 2.5e-07 60.8 196 26.0
Sabra07G0103800 Salix brachista HOM05D004358 ORTHO05D004960 3.3e-07 60.5 89 43.8
Thecc.04G185600 Theobroma cacao HOM05D004358 ORTHO05D004960 9.6e-07 58.9 32 87.5
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 2.8e-06 57.4 207 25.6
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 4.8e-06 56.6 191 26.2
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 6.2e-06 56.2 191 27.2
vmacro09566 Vaccinium macrocarpon HOM05D000222 ORTHO05D051539 8.1e-06 55.8 32 81.2


User provided reference genes

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