Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 0.0e+00 1600.5 817 100.0
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 0.0e+00 1295.8 665 97.1
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 0.0e+00 1266.9 703 88.8
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 0.0e+00 1261.1 774 81.9
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 0.0e+00 1255.0 665 94.3
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 0.0e+00 1233.0 775 80.9
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 0.0e+00 1216.4 801 77.5
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 2.2e-298 1028.9 777 66.4
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 4.5e-288 994.6 767 63.8
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 4.4e-283 978.0 769 63.7
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.2e-282 975.7 769 63.6
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 4.1e-281 971.5 780 63.1
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.2e-280 969.9 753 62.7
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 4.6e-280 968.0 813 58.7
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 3.6e-277 958.4 735 62.7
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 4.7e-277 958.0 736 62.5
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 3.4e-275 951.8 768 62.1
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 9.2e-273 943.7 769 61.2
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.7e-271 939.5 713 64.2
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.1e-270 936.8 782 60.2
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 5.6e-270 934.5 766 60.8
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 5.6e-270 934.5 759 61.7
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 2.1e-269 932.6 765 61.3
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 6.2e-269 931.0 765 61.0
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 5.2e-268 927.9 771 60.4
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 6.8e-268 927.5 817 58.5
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 3.4e-267 925.2 773 59.9
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.9e-266 922.2 724 62.6
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 2.4e-265 919.1 761 58.0
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 5.1e-263 911.4 815 56.6
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 2.5e-262 909.1 766 58.1
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 7.3e-262 907.5 828 56.8
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.4e-260 902.5 771 58.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.5e-259 899.8 823 56.7
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 3.4e-259 898.7 775 58.7
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.6e-259 897.5 729 58.8
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.9e-258 895.6 712 59.8
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.9e-258 895.6 783 57.6
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 8.4e-258 894.0 764 58.1
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 2.4e-257 892.5 746 60.7
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 4.2e-257 891.7 824 55.8
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 2.7e-256 889.0 746 58.2
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.6e-256 888.3 714 59.7
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 7.8e-256 887.5 748 59.1
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.0e-255 887.1 660 63.0
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.3e-255 886.7 712 59.3
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 3.9e-255 885.2 739 58.3
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.6e-255 884.4 702 63.2
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.1e-254 883.6 757 58.1
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 6.2e-253 877.9 738 58.1
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.1e-252 877.1 761 58.2
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 9.0e-252 874.0 759 57.2
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 3.8e-250 868.6 759 57.6
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 6.4e-250 867.8 763 56.1
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 6.4e-250 867.8 770 56.5
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 7.1e-249 864.4 747 56.4
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.2e-248 863.6 801 56.8
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.2e-248 863.6 700 58.6
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 5.1e-247 858.2 757 56.4
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 4.3e-246 855.1 750 56.3
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.4e-244 850.1 687 59.2
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 1.8e-244 849.7 780 53.3
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 4.0e-244 848.6 688 59.0
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 2.6e-243 845.9 814 54.2
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 3.4e-243 845.5 763 56.2
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 7.6e-243 844.3 688 58.3
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 8.4e-242 840.9 725 55.7
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.4e-241 840.1 669 58.0
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 7.9e-240 834.3 681 57.9
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 1.8e-239 833.2 669 57.8
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 3.9e-239 832.0 715 55.4
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.1e-238 830.5 690 57.1
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.5e-238 830.1 781 52.9
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 4.3e-238 828.6 710 55.8
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 5.6e-238 828.2 728 55.2
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 1.1e-236 823.9 669 57.5
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 3.1e-236 822.4 669 57.2
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 3.1e-236 822.4 669 57.2
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 3.1e-236 822.4 669 57.2
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 3.8e-234 815.5 661 57.6
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 3.8e-234 815.5 719 54.2
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.9e-234 815.1 741 53.8
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 7.1e-233 811.2 720 54.3
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 1.8e-231 806.6 704 55.8
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 4.8e-229 798.5 764 53.1
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 9.3e-225 784.3 786 49.7
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.8e-223 780.0 674 55.3
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.5e-214 750.4 681 52.1
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.3e-214 748.8 672 54.6
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 5.7e-214 748.4 617 59.3
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 6.3e-213 745.0 670 53.6
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 5.9e-211 738.4 762 49.1
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 2.7e-208 729.6 734 49.5
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.3e-202 710.7 635 58.1
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 9.4e-201 704.5 549 62.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 2.1e-192 676.8 610 55.1
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 7.0e-188 661.8 769 48.1
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 3.2e-172 609.8 687 45.0
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.1e-164 584.7 520 57.7
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 6.2e-160 568.9 709 43.3
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 4.1e-156 556.2 688 43.3
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 2.5e-153 547.0 468 59.0
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 6.8e-143 512.3 419 57.5
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 6.5e-117 426.0 524 45.2
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.9e-111 406.0 507 45.8
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.7e-96 358.2 491 43.8
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 8.5e-93 345.9 337 54.9
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.8e-88 330.1 342 51.8
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.6e-86 325.1 667 31.2
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.7e-80 305.1 320 49.7
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-79 302.4 342 49.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 2.9e-69 267.7 692 27.3
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.9e-68 265.0 645 28.1
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 5.2e-66 256.9 659 26.7
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.3e-58 231.5 667 26.4
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.1e-52 212.6 194 55.7
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 2.7e-46 191.4 204 47.5
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 9.8e-41 172.9 656 24.4
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.3e-40 172.6 185 50.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.6e-27 129.0 200 38.0
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 6.0e-22 110.5 68 63.2
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 7.6e-17 93.6 690 18.8
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-15 89.7 85 50.6
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 2.1e-14 85.5 670 19.0
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 6.0e-14 84.0 61 54.1
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.3e-11 76.3 51 58.8
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 2.4e-10 72.0 52 57.7
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 6.0e-06 57.4 201 26.9
Thecc.07G190000 Theobroma cacao HOM05D000001 ORTHO05D000003 6.0e-06 57.4 236 22.9
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 6.0e-06 57.4 57 49.1
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 7.9e-06 57.0 205 27.3


User provided reference genes

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