Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 8.5e-245 850.1 501 100.0
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.8e-242 842.4 501 99.0
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.8e-239 832.4 502 98.4
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-212 743.0 486 90.3
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.1e-190 669.5 486 84.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.5e-188 663.3 505 82.4
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 9.9e-185 650.6 484 80.0
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 1.5e-180 636.7 499 77.6
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 4.0e-170 602.1 501 72.5
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.9e-168 595.9 504 72.6
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.4e-167 592.8 502 70.3
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 9.3e-167 590.9 500 72.6
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 4.8e-163 578.6 506 68.6
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.5e-161 573.5 506 68.2
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.1e-159 567.4 512 69.1
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 2.5e-159 566.2 504 69.6
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 3.2e-159 565.8 506 69.8
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.2e-159 565.5 505 69.1
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.2e-158 563.9 504 68.5
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 7.9e-158 561.2 504 68.7
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.3e-156 555.8 504 67.9
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 7.4e-156 554.7 501 67.9
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 2.4e-154 549.7 510 66.9
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.2e-153 547.4 503 69.0
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 3.4e-153 545.8 502 68.9
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.5e-153 545.4 505 66.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.8e-153 545.0 502 68.9
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 3.8e-152 542.3 516 65.9
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 4.9e-152 542.0 505 66.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.4e-151 540.4 501 66.9
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 2.7e-150 536.2 504 66.3
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 6.0e-150 535.0 507 67.3
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 7.9e-150 534.6 491 65.4
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 7.9e-150 534.6 504 66.9
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 7.9e-150 534.6 486 68.5
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 2.3e-149 533.1 509 66.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 5.1e-149 531.9 515 65.0
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.5e-148 530.4 535 63.7
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 3.7e-147 525.8 503 67.0
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.1e-146 524.2 510 71.0
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.4e-146 523.9 508 65.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-146 523.5 502 65.9
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.1e-146 522.7 549 62.1
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.1e-146 522.7 549 62.1
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.2e-144 516.5 528 65.5
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 5.0e-144 515.4 504 64.5
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.1e-143 514.2 502 66.1
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 3.0e-141 506.1 503 63.2
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 8.8e-141 504.6 506 65.0
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.5e-140 503.1 516 67.2
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.7e-139 500.4 499 65.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.2e-139 500.0 502 64.9
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 3.7e-139 499.2 503 63.0
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.1e-138 496.1 515 62.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 5.3e-138 495.4 497 66.6
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 4.5e-137 492.3 505 63.8
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-135 487.3 517 61.7
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.6e-134 483.8 503 64.0
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.7e-134 482.3 322 80.1
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-133 481.1 519 62.0
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.0e-133 481.1 505 64.2
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.0e-133 481.1 506 64.0
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.1e-132 477.6 513 58.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.5e-132 477.2 519 63.4
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.6e-132 476.5 514 62.1
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 7.4e-132 474.9 514 63.6
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.7e-131 473.8 507 61.9
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 3.7e-131 472.6 475 66.3
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 8.2e-131 471.5 509 62.5
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.2e-129 467.6 514 63.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.5e-129 467.2 504 58.9
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.0e-129 466.8 500 58.4
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 6.5e-128 461.8 526 59.9
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.5e-127 459.9 510 61.8
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 3.2e-127 459.5 511 61.3
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.6e-126 457.2 530 56.0
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 4.7e-126 455.7 511 60.7
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 6.7e-125 451.8 507 55.8
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.1e-124 451.1 499 63.3
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 4.4e-124 449.1 462 65.4
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.8e-123 446.4 798 42.7
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 6.3e-123 445.3 503 60.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 9.1e-122 441.4 497 57.3
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.1e-122 441.4 515 57.1
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.9e-120 436.4 509 59.5
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.5e-119 434.1 524 58.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 7.2e-119 431.8 505 58.4
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.7e-118 429.9 484 59.5
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.3e-117 426.8 543 54.1
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.2e-117 425.6 509 58.7
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.5e-116 424.1 499 57.5
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.6e-116 423.3 533 53.3
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 5.7e-116 422.2 506 57.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.3e-115 421.0 466 63.3
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-115 420.6 549 53.2
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 2.8e-115 419.9 506 58.5
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 8.3e-115 418.3 508 59.3
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.4e-114 417.5 508 58.3
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.4e-114 417.5 506 58.3
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.4e-114 417.5 508 58.3
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.4e-114 417.5 512 59.2
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 3.1e-114 416.4 508 57.9
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 5.3e-114 415.6 507 58.4
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 9.1e-114 414.8 507 60.6
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 5.9e-113 412.1 474 58.4
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.2e-112 410.2 484 56.6
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.8e-112 409.5 542 55.7
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 5.0e-112 409.1 510 56.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.6e-110 404.1 510 51.4
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.8e-109 400.6 508 53.0
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 3.7e-107 392.9 507 57.0
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 8.3e-107 391.7 411 65.0
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 9.1e-106 388.3 499 56.3
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.7e-105 385.2 538 50.9
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 2.3e-104 383.6 521 53.4
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 8.6e-104 381.7 509 58.7
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.5e-100 370.9 499 54.9
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.5e-100 370.9 499 54.9
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 4.9e-99 365.9 514 53.3
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.5e-95 353.6 362 68.0
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 8.0e-94 348.6 439 55.8
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.2e-92 344.7 510 52.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 9.2e-90 335.1 505 46.5
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.0e-89 334.0 424 53.3
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.7e-89 333.6 287 63.8
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.0e-88 331.6 505 45.5
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 3.3e-87 326.6 526 48.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.9e-82 310.8 509 48.3
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 4.1e-82 309.7 521 48.0
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 3.5e-81 306.6 309 63.4
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 6.0e-81 305.8 319 66.1
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 2.8e-78 297.0 361 64.0
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.7e-75 286.6 513 41.5
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.4e-75 285.8 497 46.3
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.4e-74 282.7 327 51.7
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.1e-74 282.3 505 44.8
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.1e-73 280.8 505 44.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-73 280.8 497 45.9
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-72 278.1 509 44.6
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.3e-72 278.1 482 48.8
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.3e-72 277.3 513 41.3
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.5e-63 248.1 346 52.0
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 1.4e-61 241.5 158 74.7
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.2e-60 238.4 365 54.0
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-56 224.9 224 64.3
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.8e-51 206.8 275 46.5
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.1e-48 196.4 505 36.4
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.5e-44 184.9 176 70.5
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.1e-41 174.5 165 64.8
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-36 157.1 242 45.9
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.5e-28 131.7 102 80.4
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 6.1e-25 119.8 267 36.7
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.5e-23 115.2 213 43.7
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.5e-23 115.2 88 75.0
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-21 109.0 149 51.7
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.5e-20 105.1 208 49.0
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.0e-20 104.8 99 67.7
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.9e-19 100.9 58 82.8
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 8.5e-19 99.4 73 68.5
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.2e-18 97.4 101 67.3
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.3e-16 91.3 64 65.6
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 6.7e-16 89.7 111 41.4
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 8.8e-16 89.4 115 50.4
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.0e-15 88.2 95 55.8
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 5.7e-15 86.7 80 53.8
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 9.7e-15 85.9 71 62.0
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.7e-15 85.9 71 62.0
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 6.3e-14 83.2 108 52.8
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.5e-12 77.0 239 31.8
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.6e-09 68.6 227 33.9
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.7e-09 67.8 53 62.3
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.7e-09 67.8 223 38.6
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 4.7e-09 67.0 79 49.4
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 6.1e-09 66.6 64 56.2
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-08 65.9 89 46.1
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 2.0e-07 61.6 150 40.0
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 6.3e-06 56.6 116 35.3


User provided reference genes

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