Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g018480.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 6.6e-44 180.3 88 100.0
Solyc12g038120.3 Solanum lycopersicum HOM05D003938 ORTHO05D004759 5.6e-27 124.0 84 69.0
PGSC0003DMG400026878 Solanum tuberosum HOM05D003938 ORTHO05D004759 4.8e-26 120.9 84 66.7
PGSC0003DMG400004370 Solanum tuberosum HOM05D003938 ORTHO05D004759 9.0e-25 116.7 84 69.0
Sopen02g012840 Solanum pennellii HOM05D003938 ORTHO05D004759 1.1e-22 109.8 83 67.5
Sopen12g023920 Solanum pennellii HOM05D003938 ORTHO05D004759 2.5e-22 108.6 83 62.7
Solyc12g049430.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 4.2e-22 107.8 83 62.7
Sopen12g031080 Solanum pennellii HOM05D003938 ORTHO05D004759 3.5e-21 104.8 89 60.7
TPR.G22448 Trifolium pratense HOM05D003938 ORTHO05D004759 1.5e-19 99.4 77 59.7
TPR.G9407 Trifolium pratense HOM05D003938 ORTHO05D004759 1.5e-19 99.4 77 59.7
Ca_12645_v3 Cicer arietinum L. HOM05D003938 ORTHO05D004759 3.3e-19 98.2 77 58.4
arahy.Tifrunner.gnm1.ann1.KA488U Arachis hypogaea HOM05D003938 ORTHO05D004759 5.7e-19 97.4 78 62.8
arahy.Tifrunner.gnm1.ann1.TD7I6F Arachis hypogaea HOM05D003938 ORTHO05D004759 5.7e-19 97.4 78 62.8
Medtr6g084140 Medicago truncatula HOM05D003938 ORTHO05D004759 5.7e-19 97.4 77 59.7
Glyma.19G004200 Glycine max HOM05D003938 ORTHO05D004759 9.7e-19 96.7 79 59.5
Nitab4.5_0001749g0120 Nicotiana tabacum HOM05D003938 ORTHO05D004759 9.7e-19 96.7 100 55.0
Sopen07g034590 Solanum pennellii HOM05D003938 ORTHO05D004759 9.7e-19 96.7 79 59.5
Medtr8g442420 Medicago truncatula HOM05D003938 ORTHO05D004759 1.3e-18 96.3 77 58.4
Nitab4.5_0009317g0010 Nicotiana tabacum HOM05D003938 ORTHO05D004759 1.3e-18 96.3 100 55.0
Solyc07g066420.4 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.6e-18 95.9 77 61.0
CAN.G943.34 Capsicum annuum HOM05D003938 ORTHO05D004759 2.2e-18 95.5 100 54.0
SGA_v2.0_scaffold7G03579 Striga asiatica HOM05D003938 ORTHO05D004759 2.2e-18 95.5 75 61.3
MSTRG.16112 Avicennia marina HOM05D003938 ORTHO05D004759 2.8e-18 95.1 79 58.2
Phvul.011G177175 Phaseolus vulgaris HOM05D003938 ORTHO05D004759 2.8e-18 95.1 79 57.0
Glyma.15G213200 Glycine max HOM05D003938 ORTHO05D004759 3.7e-18 94.7 79 59.5
Psat4g174120 Pisum sativum HOM05D003938 ORTHO05D004759 6.3e-18 94.0 77 55.8
HPP92_008853 Vanilla planifolia HOM05D003938 ORTHO05D004759 8.2e-18 93.6 81 56.8
CARHR044020 Cardamine hirsuta HOM05D003938 ORTHO05D004759 1.1e-17 93.2 83 54.2
Nn7g37935 Nelumbo nucifera HOM05D003938 ORTHO05D004759 1.1e-17 93.2 68 61.8
Cc05_g16030 Coffea canephora HOM05D003938 ORTHO05D004759 1.4e-17 92.8 79 58.2
Dinv19621 Davidia involucrata HOM05D003938 ORTHO05D004759 1.4e-17 92.8 80 56.2
Solyc02g061800.2 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.4e-17 92.8 57 71.9
AT1G53720 Arabidopsis thaliana HOM05D003938 ORTHO05D004759 1.8e-17 92.4 83 54.2
Thhalv10011414m.g Eutrema salsugineum HOM05D003938 ORTHO05D004759 1.8e-17 92.4 86 52.3
HPP92_008859 Vanilla planifolia HOM05D003938 ORTHO05D004759 1.8e-17 92.4 81 56.8
Gohir.A05G003300 Gossypium hirsutum HOM05D003938 ORTHO05D004759 2.4e-17 92.0 83 51.8
THA.LOC104822756 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 3.1e-17 91.7 84 54.8
TAR626G0088 Trochodendron aralioides HOM05D003938 ORTHO05D004759 3.1e-17 91.7 81 55.6
AL1G62420 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 4.1e-17 91.3 83 53.0
Lj3g0013935 Lotus japonicus HOM05D003938 ORTHO05D004759 4.1e-17 91.3 79 55.7
Lalb_Chr01g0007211 Lupinus albus HOM05D003938 ORTHO05D004759 4.1e-17 91.3 92 52.2
MD10G1204000 Malus domestica HOM05D003938 ORTHO05D004759 4.1e-17 91.3 79 55.7
Manes.06G173850 Manihot esculenta HOM05D003938 ORTHO05D004759 4.1e-17 91.3 69 59.4
Peaxi162Scf00452g00848 Petunia axillaris HOM05D003938 ORTHO05D004759 4.1e-17 91.3 100 51.0
unitig_26.g10081 Utricularia gibba HOM05D003938 ORTHO05D004759 4.1e-17 91.3 79 55.7
GSVIVG01020281001 Vitis vinifera HOM05D003938 ORTHO05D004759 4.1e-17 91.3 83 55.4
Migut.M01560 Erythranthe guttata HOM05D003938 ORTHO05D004759 5.3e-17 90.9 79 54.4
Gorai.009G003300 Gossypium raimondii HOM05D003938 ORTHO05D004759 5.3e-17 90.9 83 50.6
HanXRQChr05g0160881 Helianthus annuus HOM05D003938 ORTHO05D004759 5.3e-17 90.9 81 53.1
Duzib168G1061 Durio zibethinus HOM05D003938 ORTHO05D004759 6.9e-17 90.5 82 53.7
MD05G1222400 Malus domestica HOM05D003938 ORTHO05D004759 6.9e-17 90.5 79 55.7
MELO3C012622.2 Cucumis melo HOM05D003938 ORTHO05D004759 9.0e-17 90.1 65 61.5
QL04p077115 Quercus lobata HOM05D003938 ORTHO05D004759 9.0e-17 90.1 80 48.8
RcHm_v2.0_Chr5g0026161 Rosa chinensis HOM05D003938 ORTHO05D004759 9.0e-17 90.1 81 54.3
CANSAT80G1380 Cannabis sativa HOM05D003938 ORTHO05D004759 1.2e-16 89.7 80 55.0
Carub.0001s4300 Capsella rubella HOM05D003938 ORTHO05D004759 1.2e-16 89.7 83 51.8
CsaV3_7G022770 Cucumis sativus L. HOM05D003938 ORTHO05D004759 1.2e-16 89.7 81 53.1
Sc09g0007280 Simmondsia chinensis HOM05D003938 ORTHO05D004759 1.2e-16 89.7 78 55.1
CSS0016392 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 1.5e-16 89.4 67 59.7
Gohir.D05G003701 Gossypium hirsutum HOM05D003938 ORTHO05D004759 1.5e-16 89.4 67 58.2
Lj8A187T28 Lonicera japonica HOM05D003938 ORTHO05D004759 2.0e-16 89.0 62 64.5
Prupe.4G137900 Prunus persica HOM05D003938 ORTHO05D004759 2.0e-16 89.0 80 55.0
Solyc12g038020.3 Solanum lycopersicum HOM05D003938 ORTHO05D004759 2.6e-16 88.6 56 69.6
CSS0000259 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 3.4e-16 88.2 64 60.9
CSS0019207 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 3.4e-16 88.2 64 60.9
AUR62037621 Chenopodium quinoa HOM05D003938 ORTHO05D004759 3.4e-16 88.2 77 49.4
AUR62040863 Chenopodium quinoa HOM05D003938 ORTHO05D004759 3.4e-16 88.2 77 49.4
FvH4_3g15530 Fragaria vesca HOM05D003938 ORTHO05D004759 3.4e-16 88.2 81 53.1
FAN16G1651 Fragaria x ananassa HOM05D003938 ORTHO05D004759 3.4e-16 88.2 81 53.1
FAN21G1947 Fragaria x ananassa HOM05D003938 ORTHO05D004759 3.4e-16 88.2 81 53.1
FAN25G2080 Fragaria x ananassa HOM05D003938 ORTHO05D004759 3.4e-16 88.2 81 53.1
Lsat_1_v5_gn_7_71321 Lactuca sativa HOM05D003938 ORTHO05D004759 3.4e-16 88.2 91 51.6
PGR119G1566 Punica granatum HOM05D003938 ORTHO05D004759 3.4e-16 88.2 81 54.3
Sabra05G0079800 Salix brachista HOM05D003938 ORTHO05D004759 3.4e-16 88.2 79 55.7
Sed0018665 Sechium edule HOM05D003938 ORTHO05D004759 3.4e-16 88.2 65 60.0
Aa31LG10G170 Aethionema arabicum HOM05D003938 ORTHO05D004759 4.5e-16 87.8 83 53.0
Eucgr.F01467 Eucalyptus grandis HOM05D003938 ORTHO05D004759 4.5e-16 87.8 68 55.9
Potri.005G097500 Populus trichocarpa HOM05D003938 ORTHO05D004759 4.5e-16 87.8 81 54.3
ATR0763G204 Amborella trichopoda HOM05D003938 ORTHO05D004759 5.9e-16 87.4 80 53.8
Os06g0670500 Oryza sativa ssp. japonica HOM05D003938 ORTHO05D004759 5.9e-16 87.4 79 54.4
Zm00001eb274050 Zea mays HOM05D003938 ORTHO05D004759 5.9e-16 87.4 77 54.5
Atru.chr1.190 Acer truncatum HOM05D003938 ORTHO05D004759 1.0e-15 86.7 80 52.5
Sp1g38950 Schrenkiella parvula HOM05D003938 ORTHO05D004759 1.0e-15 86.7 72 54.2
BcaB04g16924 Brassica carinata HOM05D003938 ORTHO05D004759 1.3e-15 86.3 83 50.6
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 1.3e-15 86.3 83 50.6
CiPaw.01G119900 Carya illinoinensis HOM05D003938 ORTHO05D004759 1.3e-15 86.3 65 60.0
Aqoxy3G04185_Aqoxy3G04186 Aquilegia oxysepala HOM05D003938 ORTHO05D004759 1.7e-15 85.9 86 47.7
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 1.7e-15 85.9 83 50.6
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 1.7e-15 85.9 83 50.6
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 1.7e-15 85.9 83 50.6
FAN11G2591 Fragaria x ananassa HOM05D003938 ORTHO05D004759 1.7e-15 85.9 62 62.9
Actinidia07348 Actinidia chinensis HOM05D003938 ORTHO05D004759 2.9e-15 85.1 78 52.6
PGSC0003DMG400017036 Solanum tuberosum HOM05D003938 ORTHO05D004759 2.9e-15 85.1 58 65.5
CDE01G0219 Ceratophyllum demersum HOM05D003938 ORTHO05D004759 6.5e-15 84.0 62 59.7
ECA240G3729 Erigeron canadensis HOM05D003938 ORTHO05D004759 6.5e-15 84.0 81 51.9
TWI74G0164 Tripterygium wilfordii HOM05D003938 ORTHO05D004759 6.5e-15 84.0 81 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1871 Anthoceros agrestis HOM05D003938 ORTHO05D004759 8.5e-15 83.6 62 59.7
PSO675G9176 Papaver somniferum HOM05D003938 ORTHO05D004759 1.4e-14 82.8 81 50.6
PSO717G0129 Papaver somniferum HOM05D003938 ORTHO05D004759 1.4e-14 82.8 81 50.6
SMO351G0536 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 1.4e-14 82.8 74 51.4
Pp3c1_5600 Physcomitrium patens HOM05D003938 ORTHO05D004759 4.2e-14 81.3 79 50.6
PGSC0003DMG400004369 Solanum tuberosum HOM05D003938 ORTHO05D004759 4.2e-14 81.3 58 63.8
Mapoly0010s0175 Marchantia polymorpha HOM05D003938 ORTHO05D004759 5.5e-14 80.9 62 59.7
Nitab4.5_0004242g0030 Nicotiana tabacum HOM05D003938 ORTHO05D004759 5.5e-14 80.9 68 54.4
Ciclev10004604m.g Citrus clementina HOM05D003938 ORTHO05D004759 1.2e-13 79.7 83 47.0
Sopen12g023950 Solanum pennellii HOM05D003938 ORTHO05D004759 7.9e-13 77.0 57 61.4
Carub.0008s0543 Capsella rubella HOM05D003938 ORTHO05D004759 1.0e-12 76.6 67 53.7
PSO447G0031 Papaver somniferum HOM05D003938 ORTHO05D004759 1.0e-12 76.6 81 48.1
EL10Ac6g14407 Beta vulgaris HOM05D003938 ORTHO05D004759 2.3e-12 75.5 73 52.1
CSS0007376 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 3.0e-12 75.1 61 59.0
EL10Ac6g14412 Beta vulgaris HOM05D003938 ORTHO05D004759 8.8e-12 73.6 77 44.2
Ciclev10007155m.g Citrus clementina HOM05D003938 ORTHO05D004759 8.8e-12 73.6 70 44.3
ClCG09G022610 Citrullus lanatus HOM05D003938 ORTHO05D004759 1.7e-10 69.3 108 37.0
Haze_26935 Corylus avellana HOM05D003938 ORTHO05D004759 1.7e-10 69.3 62 54.8
MCO01G120 Micromonas commoda HOM05D003938 ORTHO05D004759 3.7e-10 68.2 66 48.5
VMungo1127G1443 Vigna mungo HOM05D003938 ORTHO05D004759 3.7e-10 68.2 61 55.7
PSO675G8491 Papaver somniferum HOM05D003938 ORTHO05D004759 1.4e-09 66.2 107 37.4
Thecc.09G180900 Theobroma cacao HOM05D003938 ORTHO05D004759 1.4e-09 66.2 61 55.7
EL10Ac2g03350 Beta vulgaris HOM05D003938 ORTHO05D004759 1.8e-09 65.9 59 49.2
CSS0024659 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 4.1e-09 64.7 53 54.7
Cre11.g479850 Chlamydomonas reinhardtii HOM05D003938 ORTHO05D004759 6.9e-09 63.9 65 44.6
SMO353G0235 Selaginella moellendorffii HOM05D003938 ORTHO05D004759 2.6e-08 62.0 67 47.8
Cfa023095 Carpinus fangiana HOM05D003938 ORTHO05D004759 1.1e-06 56.6 87 33.3
ECA248G1281 Erigeron canadensis HOM05D003938 ORTHO05D004759 3.2e-06 55.1 41 58.5
Oeu003830.4 Olea europaea HOM05D003938 ORTHO05D004759 7.2e-06 53.9 54 48.1
Potri.007G067000 Populus trichocarpa HOM05D003938 ORTHO05D004759 7.2e-06 53.9 58 53.4


User provided reference genes

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