Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 6.4e-131 470.7 230 100.0
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 6.4e-131 470.7 230 100.0
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 4.6e-121 438.0 229 93.9
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 8.7e-120 433.7 227 91.2
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 2.5e-119 432.2 228 88.6
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 2.8e-118 428.7 222 91.4
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 3.7e-118 428.3 230 89.1
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 4.8e-118 427.9 230 90.0
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 6.2e-118 427.6 226 89.4
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 6.2e-118 427.6 223 92.4
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 1.4e-117 426.4 231 88.7
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.8e-117 426.0 231 87.9
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.8e-117 426.0 231 87.9
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 1.8e-117 426.0 225 91.1
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 2.4e-117 425.6 229 89.1
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 2.4e-117 425.6 226 90.3
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 2.4e-117 425.6 227 89.9
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 3.1e-117 425.2 226 88.9
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 4.0e-117 424.9 231 87.4
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 4.0e-117 424.9 225 89.3
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 6.9e-117 424.1 231 87.4
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 1.2e-116 423.3 218 92.7
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 1.2e-116 423.3 227 88.1
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.5e-116 422.9 231 87.0
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.0e-116 422.5 233 87.6
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 2.6e-116 422.2 226 88.1
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 4.5e-116 421.4 228 89.0
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 4.5e-116 421.4 226 92.5
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 5.8e-116 421.0 225 88.0
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 1.0e-115 420.2 220 90.0
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.9e-115 418.7 223 88.8
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.9e-115 418.7 226 87.6
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 2.9e-115 418.7 226 86.7
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 3.8e-115 418.3 219 89.0
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 4.9e-115 417.9 227 88.1
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 8.4e-115 417.2 225 88.9
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 8.4e-115 417.2 228 88.6
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 8.4e-115 417.2 221 89.6
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.9e-114 416.0 215 91.6
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 1.9e-114 416.0 232 85.3
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.9e-114 416.0 223 87.9
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.5e-114 415.6 223 89.7
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.2e-114 415.2 226 86.3
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 4.2e-114 414.8 221 87.3
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 5.5e-114 414.5 226 87.2
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 5.5e-114 414.5 220 88.2
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 5.5e-114 414.5 219 89.0
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 7.1e-114 414.1 220 88.2
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.2e-113 413.3 220 88.2
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.2e-113 413.3 220 88.2
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.2e-113 413.3 220 88.2
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.2e-113 413.3 224 87.5
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.6e-113 412.9 221 86.9
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 2.1e-113 412.5 221 87.3
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 2.7e-113 412.1 231 84.8
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 4.6e-113 411.4 226 85.4
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 4.6e-113 411.4 227 85.9
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 7.9e-113 410.6 220 86.8
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 7.9e-113 410.6 227 85.5
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 7.9e-113 410.6 226 85.4
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 7.9e-113 410.6 225 87.1
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.3e-112 409.8 227 85.5
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 3.0e-112 408.7 266 78.6
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 3.0e-112 408.7 220 87.3
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 3.9e-112 408.3 215 88.8
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 3.9e-112 408.3 219 86.8
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 3.9e-112 408.3 219 88.1
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.5e-111 406.4 216 88.9
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.5e-111 406.4 227 84.6
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.5e-111 406.4 214 89.3
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 1.3e-110 403.3 238 81.1
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.6e-110 402.9 222 86.5
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 2.8e-110 402.1 202 94.6
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 8.2e-110 400.6 239 80.8
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.4e-109 399.1 223 84.3
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 3.1e-109 398.7 223 83.4
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 4.1e-109 398.3 223 83.0
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 4.1e-109 398.3 223 83.0
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 5.3e-109 397.9 229 83.8
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.5e-108 396.4 219 87.2
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 2.0e-108 396.0 219 87.2
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 2.9e-107 392.1 195 95.4
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.4e-106 389.8 228 82.0
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.4e-106 389.8 262 75.2
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 1.4e-104 383.3 227 78.4
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 5.1e-104 381.3 223 83.0
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 5.7e-103 377.9 209 84.7
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 7.4e-103 377.5 209 84.7
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 4.8e-102 374.8 226 81.4
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.4e-101 373.2 198 87.9
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 2.6e-100 369.0 219 75.8
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 5.9e-100 367.9 219 76.3
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 2.5e-98 362.5 219 75.3
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 3.2e-98 362.1 213 80.3
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 8.8e-96 354.0 203 83.7
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 1.5e-95 353.2 207 77.8
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 6.3e-94 347.8 197 86.8
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 5.3e-93 344.7 192 87.5
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 1.2e-92 343.6 204 74.5
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 2.0e-92 342.8 192 84.9
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 2.2e-91 339.3 206 77.2
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 5.0e-91 338.2 208 80.3
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.6e-89 333.2 214 76.2
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 2.7e-89 332.4 228 73.2
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 2.7e-89 332.4 201 81.6
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 8.0e-89 330.9 223 73.5
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 2.8e-86 322.4 228 71.5
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 1.8e-85 319.7 218 74.3
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.6e-84 316.6 169 89.3
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 9.4e-82 307.4 227 64.8
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 6.1e-81 304.7 224 65.2
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 8.0e-81 304.3 180 82.2
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 9.1e-77 290.8 216 63.4
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 4.5e-76 288.5 160 83.8
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 6.6e-67 258.1 190 74.2
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 1.7e-59 233.4 150 80.0
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 6.6e-59 231.5 231 56.7
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.3e-56 223.0 113 90.3
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 2.7e-52 209.5 198 56.6
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 7.8e-36 154.8 83 85.5
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.5e-31 140.6 107 65.4
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.3e-27 127.5 70 87.1
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.6e-27 125.2 96 64.6
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.1e-24 116.3 74 74.3
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 1.7e-22 110.5 96 58.3
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 2.4e-21 106.7 71 71.8
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 2.7e-20 103.2 95 54.7
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 1.0e-19 101.3 76 67.1
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.1e-18 97.8 54 79.6
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.8e-16 90.5 60 71.7
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 8.1e-09 65.1 44 68.2
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.1e-08 63.2 34 70.6


User provided reference genes

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