Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.7e-103 379.4 198 100.0
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 2.1e-101 372.5 198 98.5
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 4.7e-98 361.3 198 96.0
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.0e-89 331.6 198 89.9
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.6e-85 318.2 198 87.4
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 1.1e-83 313.5 208 82.7
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 2.1e-61 239.6 196 70.9
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 4.8e-58 228.4 218 60.6
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 6.9e-49 198.0 221 53.8
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 9.0e-49 197.6 208 56.2
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 5.9e-48 194.9 205 53.7
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.3e-47 193.7 205 58.0
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 1.1e-46 190.7 209 56.5
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 1.4e-46 190.3 218 53.2
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.5e-46 189.5 208 56.2
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 3.2e-46 189.1 205 56.1
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 9.4e-46 187.6 205 51.7
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 2.7e-45 186.0 177 62.1
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 6.1e-45 184.9 211 59.7
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.0e-44 184.1 203 56.7
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 1.8e-44 183.3 218 52.8
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 3.9e-44 182.2 219 54.3
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.9e-44 182.2 204 54.9
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 2.0e-43 179.9 205 53.7
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 2.5e-43 179.5 205 54.1
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 2.5e-43 179.5 207 53.6
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.3e-43 178.7 213 53.5
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 5.7e-43 178.3 208 55.8
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 5.7e-43 178.3 218 52.3
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 9.7e-43 177.6 209 54.1
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 9.7e-43 177.6 208 53.4
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 1.7e-42 176.8 203 58.1
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 1.7e-42 176.8 203 58.1
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 2.8e-42 176.0 207 55.1
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 4.8e-42 175.3 220 53.6
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 4.8e-42 175.3 215 52.1
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 6.3e-42 174.9 200 56.0
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 3.1e-41 172.6 192 54.2
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 5.3e-41 171.8 208 53.8
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 5.3e-41 171.8 209 50.7
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 6.9e-41 171.4 222 50.5
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.2e-40 170.6 210 53.8
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.5e-40 170.2 165 61.2
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 2.6e-40 169.5 209 52.2
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 5.9e-40 168.3 201 52.2
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.3e-39 167.2 173 56.1
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.3e-39 167.2 142 68.3
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.3e-39 167.2 198 52.5
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 2.2e-39 166.4 211 51.2
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 2.9e-39 166.0 212 55.2
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.8e-39 165.6 208 53.4
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.8e-39 165.6 208 53.4
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 1.4e-38 163.7 208 53.4
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 1.4e-38 163.7 214 50.9
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 1.9e-38 163.3 209 51.2
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 1.9e-38 163.3 207 51.2
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 4.2e-38 162.2 209 51.2
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 4.2e-38 162.2 220 50.5
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 5.5e-38 161.8 209 52.2
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 9.4e-38 161.0 217 50.2
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.7e-37 159.5 209 51.7
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 2.7e-37 159.5 210 49.0
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.6e-37 159.1 259 45.2
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 3.6e-37 159.1 208 51.4
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.1e-37 158.3 211 52.1
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 7.9e-37 157.9 205 53.2
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.0e-36 157.5 211 49.3
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.0e-36 157.5 211 49.3
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 1.4e-36 157.1 228 50.0
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 1.8e-36 156.8 193 51.3
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.8e-36 156.8 208 51.9
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.8e-36 156.8 124 66.1
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 2.3e-36 156.4 121 68.6
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 2.3e-36 156.4 207 49.3
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 5.1e-36 155.2 87 86.2
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 8.8e-36 154.5 208 52.4
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 4.4e-35 152.1 202 53.5
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 5.7e-35 151.8 215 50.7
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 5.7e-35 151.8 206 49.5
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.3e-34 150.6 202 53.0
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 1.3e-34 150.6 198 53.5
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 1.3e-34 150.6 198 53.5
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 1.7e-34 150.2 224 46.4
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.1e-33 147.5 135 61.5
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 1.8e-33 146.7 204 51.0
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 1.8e-33 146.7 143 67.1
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 3.1e-33 146.0 206 50.5
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 1.6e-32 143.7 116 66.4
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 2.0e-32 143.3 138 58.7
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 2.6e-32 142.9 205 52.7
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.0e-31 141.0 192 51.6
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.7e-31 140.2 230 44.3
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 2.9e-31 139.4 215 46.0
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 5.0e-31 138.7 190 46.3
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 5.0e-31 138.7 174 55.7
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 1.5e-30 137.1 201 47.3
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 1.9e-30 136.7 205 51.7
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 4.2e-30 135.6 113 65.5
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 4.2e-30 135.6 220 48.2
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 5.5e-30 135.2 114 67.5
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 7.2e-30 134.8 148 58.8
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 7.2e-30 134.8 215 47.4
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 9.4e-30 134.4 189 48.7
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 9.4e-30 134.4 209 49.3
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 1.6e-29 133.7 119 66.4
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 1.6e-29 133.7 119 66.4
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.1e-29 133.3 117 63.2
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.1e-29 133.3 117 63.2
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 2.7e-29 132.9 111 64.9
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 2.7e-29 132.9 172 48.8
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.6e-29 132.5 192 52.6
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 4.7e-29 132.1 175 50.9
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 6.1e-29 131.7 111 64.0
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 1.0e-28 131.0 209 49.3
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 1.4e-28 130.6 218 47.7
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.4e-28 130.6 98 68.4
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.4e-28 130.6 98 68.4
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.4e-28 130.6 204 45.1
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.8e-28 130.2 114 64.0
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 5.2e-28 128.6 207 47.3
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 6.7e-28 128.3 205 47.3
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 8.8e-28 127.9 207 45.9
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 1.1e-27 127.5 212 43.4
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.1e-27 127.5 185 47.0
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 2.6e-27 126.3 224 45.5
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 2.6e-27 126.3 224 45.5
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 5.7e-27 125.2 178 48.9
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.7e-27 125.2 191 49.2
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 7.5e-27 124.8 206 49.5
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 9.7e-27 124.4 245 42.9
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 9.7e-27 124.4 201 50.7
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.3e-26 124.0 203 44.3
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.7e-26 123.6 190 46.8
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.7e-26 122.5 212 43.9
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.7e-26 122.5 212 43.9
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 4.8e-26 122.1 89 69.7
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.8e-26 122.1 176 51.7
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.8e-26 122.1 176 51.7
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 4.8e-26 122.1 146 52.1
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.8e-25 120.2 59 91.5
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 2.4e-25 119.8 204 49.0
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.4e-25 119.8 208 42.8
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 2.4e-25 119.8 107 57.0
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 3.1e-25 119.4 205 43.9
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 7.0e-25 118.2 194 45.4
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 9.1e-25 117.9 234 44.0
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 9.1e-25 117.9 109 62.4
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 9.1e-25 117.9 207 43.0
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 2.7e-24 116.3 114 61.4
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.0e-23 114.4 207 41.1
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 2.2e-23 113.2 244 43.0
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.9e-23 112.8 181 47.0
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 2.9e-23 112.8 197 45.7
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 5.0e-23 112.1 201 42.3
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 6.5e-23 111.7 115 60.0
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.5e-22 110.5 115 59.1
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 5.5e-22 108.6 204 47.1
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 7.2e-22 108.2 72 66.7
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 1.6e-21 107.1 210 43.8
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 3.6e-21 105.9 183 45.9
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 4.7e-21 105.5 72 68.1
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.7e-21 105.5 56 83.9
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.0e-20 102.8 88 62.5
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 8.3e-18 94.7 207 41.1
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 8.3e-18 94.7 205 40.0
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.6e-16 90.5 150 46.7
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.0e-16 90.1 180 43.3
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 2.7e-16 89.7 198 40.4
CAN.G2490.1 Capsicum annuum HOM05D003686 ORTHO05D004322 3.5e-16 89.4 87 66.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.5e-14 84.0 189 45.0
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 5.5e-14 82.0 136 41.2
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 9.4e-14 81.3 41 80.5
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 2.1e-13 80.1 177 43.5
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 3.6e-13 79.3 194 34.5
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 8.0e-13 78.2 194 34.5
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 8.8e-12 74.7 81 55.6
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 4.9e-10 68.9 116 41.4
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 5.9e-08 62.0 59 54.2
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 8.6e-07 58.2 104 41.3


User provided reference genes

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