Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g083220.2 Solanum lycopersicum HOM05D000228 ORTHO05D001545 3.4e-74 281.6 140 100.0
Sopen02g027960 Solanum pennellii HOM05D000228 ORTHO05D001545 4.0e-67 258.1 138 94.2
Sopen02g028130 Solanum pennellii HOM05D000228 ORTHO05D001545 4.6e-63 244.6 130 93.8
PGSC0003DMG400003590 Solanum tuberosum HOM05D000228 ORTHO05D001545 1.7e-62 242.7 130 93.1
CAN.G890.26 Capsicum annuum HOM05D000228 ORTHO05D001545 1.5e-61 239.6 130 91.5
Peaxi162Scf00328g00128 Petunia axillaris HOM05D000228 ORTHO05D001545 4.7e-60 234.6 131 89.3
Nitab4.5_0001696g0010 Nicotiana tabacum HOM05D000228 ORTHO05D001545 1.1e-59 233.4 130 88.5
Nitab4.5_0006892g0040 Nicotiana tabacum HOM05D000228 ORTHO05D001545 1.1e-59 233.4 130 88.5
Migut.N01734 Erythranthe guttata HOM05D000228 ORTHO05D001545 6.4e-57 224.2 130 86.2
Cc07_g11330 Coffea canephora HOM05D000228 ORTHO05D001545 1.6e-55 219.5 130 80.8
Cc08_g04860 Coffea canephora HOM05D000228 ORTHO05D001545 1.6e-55 219.5 130 80.8
Gohir.A11G171700 Gossypium hirsutum HOM05D000228 ORTHO05D001545 2.1e-55 219.2 130 80.8
PGR119G0284 Punica granatum HOM05D000228 ORTHO05D001545 3.5e-55 218.4 130 81.5
Duzib187G1668 Durio zibethinus HOM05D000228 ORTHO05D001545 7.8e-55 217.2 130 80.8
Gohir.D11G178600 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.7e-54 216.1 130 79.2
Gorai.007G190500 Gossypium raimondii HOM05D000228 ORTHO05D001545 1.7e-54 216.1 130 79.2
vmacro04378 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 1.7e-54 216.1 130 79.2
Thecc.01G011300 Theobroma cacao HOM05D000228 ORTHO05D001545 3.9e-54 214.9 130 80.0
MD02G1123400 Malus domestica HOM05D000228 ORTHO05D001545 5.1e-54 214.5 130 80.0
TAR628G0489 Trochodendron aralioides HOM05D000228 ORTHO05D001545 6.6e-54 214.2 130 78.5
Gohir.A02G174500 Gossypium hirsutum HOM05D000228 ORTHO05D001545 8.6e-54 213.8 130 77.7
Gorai.003G005700 Gossypium raimondii HOM05D000228 ORTHO05D001545 8.6e-54 213.8 130 77.7
COL.COLO4_22497 Corchorus olitorius HOM05D000228 ORTHO05D001545 1.1e-53 213.4 130 80.0
CsaV3_3G000490 Cucumis sativus L. HOM05D000228 ORTHO05D001545 1.9e-53 212.6 130 78.5
TAR376G0725 Trochodendron aralioides HOM05D000228 ORTHO05D001545 1.9e-53 212.6 130 76.9
TPR.G25137 Trifolium pratense HOM05D000228 ORTHO05D001545 2.5e-53 212.2 130 79.2
ECA247G3915 Erigeron canadensis HOM05D000228 ORTHO05D001545 3.3e-53 211.8 130 80.0
Nn6g31908 Nelumbo nucifera HOM05D000228 ORTHO05D001545 3.3e-53 211.8 130 78.5
Cpa.g.sc6.315 Carica papaya HOM05D000228 ORTHO05D001545 4.3e-53 211.5 130 77.7
Potri.005G107600 Populus trichocarpa HOM05D000228 ORTHO05D001545 4.3e-53 211.5 130 77.7
Sabra05G0088100 Salix brachista HOM05D000228 ORTHO05D001545 4.3e-53 211.5 130 78.5
MD15G1237200 Malus domestica HOM05D000228 ORTHO05D001545 5.6e-53 211.1 130 78.5
Cfa007031 Carpinus fangiana HOM05D000228 ORTHO05D001545 7.3e-53 210.7 130 77.7
Glyma.11G081200 Glycine max HOM05D000228 ORTHO05D001545 7.3e-53 210.7 130 77.7
Gohir.D03G005300 Gossypium hirsutum HOM05D000228 ORTHO05D001545 7.3e-53 210.7 130 76.9
Atru.chr3.909 Acer truncatum HOM05D000228 ORTHO05D001545 9.5e-53 210.3 130 76.9
Dinv39555 Davidia involucrata HOM05D000228 ORTHO05D001545 9.5e-53 210.3 130 76.2
Lsat_1_v5_gn_1_12220 Lactuca sativa HOM05D000228 ORTHO05D001545 9.5e-53 210.3 130 78.5
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 1.2e-52 209.9 130 76.9
ClCG10G000460 Citrullus lanatus HOM05D000228 ORTHO05D001545 1.6e-52 209.5 130 77.7
Dinv31892 Davidia involucrata HOM05D000228 ORTHO05D001545 2.1e-52 209.1 130 76.2
Hma1.2p1_1598F.1_g292950 Hydrangea macrophylla HOM05D000228 ORTHO05D001545 2.1e-52 209.1 130 77.7
Phvul.002G104500 Phaseolus vulgaris HOM05D000228 ORTHO05D001545 2.1e-52 209.1 130 76.9
TWI09G0739 Tripterygium wilfordii HOM05D000228 ORTHO05D001545 2.1e-52 209.1 130 76.9
Haze_03702 Corylus avellana HOM05D000228 ORTHO05D001545 2.8e-52 208.8 130 76.9
Glyma.01G162200 Glycine max HOM05D000228 ORTHO05D001545 2.8e-52 208.8 130 77.7
Ca_24944_v3 Cicer arietinum L. HOM05D000228 ORTHO05D001545 3.6e-52 208.4 130 77.7
MELO3C013741.2 Cucumis melo HOM05D000228 ORTHO05D001545 3.6e-52 208.4 130 76.9
PSO541G3277 Papaver somniferum HOM05D000228 ORTHO05D001545 3.6e-52 208.4 130 76.2
PSO675G5068 Papaver somniferum HOM05D000228 ORTHO05D001545 3.6e-52 208.4 130 76.2
Prupe.7G175200 Prunus persica HOM05D000228 ORTHO05D001545 3.6e-52 208.4 130 77.7
Psat2g151920 Pisum sativum HOM05D000228 ORTHO05D001545 4.7e-52 208.0 130 78.5
HanXRQChr04g0107401 Helianthus annuus HOM05D000228 ORTHO05D001545 6.2e-52 207.6 130 77.7
Manes.01G151000 Manihot esculenta HOM05D000228 ORTHO05D001545 6.2e-52 207.6 130 76.9
CiPaw.07G063400 Carya illinoinensis HOM05D000228 ORTHO05D001545 1.1e-51 206.8 130 76.9
VMungo1215G1821 Vigna mungo HOM05D000228 ORTHO05D001545 1.1e-51 206.8 130 76.9
Lj2g0016023 Lotus japonicus HOM05D000228 ORTHO05D001545 1.8e-51 206.1 130 76.9
Lalb_Chr09g0321431 Lupinus albus HOM05D000228 ORTHO05D001545 1.8e-51 206.1 130 76.2
Aqoxy5G01098 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 2.3e-51 205.7 130 76.2
Sed0006002 Sechium edule HOM05D000228 ORTHO05D001545 2.3e-51 205.7 130 75.4
SGA_v2.0_scaffold127G34014 Striga asiatica HOM05D000228 ORTHO05D001545 2.3e-51 205.7 130 80.8
FAN28G2440 Fragaria x ananassa HOM05D000228 ORTHO05D001545 3.1e-51 205.3 130 78.5
Lj4C801G10 Lonicera japonica HOM05D000228 ORTHO05D001545 3.1e-51 205.3 130 76.2
FAN26G3056 Fragaria x ananassa HOM05D000228 ORTHO05D001545 5.2e-51 204.5 136 74.3
Medtr5g023020 Medicago truncatula HOM05D000228 ORTHO05D001545 6.8e-51 204.1 130 76.2
Ciclev10024686m.g Citrus clementina HOM05D000228 ORTHO05D001545 1.2e-50 203.4 130 75.4
Oeu039718.1 Olea europaea HOM05D000228 ORTHO05D001545 1.2e-50 203.4 168 63.7
Sp7g33590 Schrenkiella parvula HOM05D000228 ORTHO05D001545 1.2e-50 203.4 131 74.0
THA.LOC104804281 Tarenaya hassleriana HOM05D000228 ORTHO05D001545 1.5e-50 203.0 130 73.1
Aa31LG6G12760 Aethionema arabicum HOM05D000228 ORTHO05D001545 2.6e-50 202.2 131 74.0
Thhalv10024193m.g Eutrema salsugineum HOM05D000228 ORTHO05D001545 2.6e-50 202.2 131 74.0
FAN19G0156 Fragaria x ananassa HOM05D000228 ORTHO05D001545 3.4e-50 201.8 130 76.9
FAN23G1904 Fragaria x ananassa HOM05D000228 ORTHO05D001545 4.4e-50 201.4 130 76.2
Glyma.09G278900 Glycine max HOM05D000228 ORTHO05D001545 4.4e-50 201.4 130 75.4
Lalb_Chr17g0338781 Lupinus albus HOM05D000228 ORTHO05D001545 4.4e-50 201.4 131 76.3
AL7G15270 Arabidopsis lyrata HOM05D000228 ORTHO05D001545 7.6e-50 200.7 131 72.5
QL06p052087 Quercus lobata HOM05D000228 ORTHO05D001545 9.9e-50 200.3 130 73.8
RcHm_v2.0_Chr2g0098321 Rosa chinensis HOM05D000228 ORTHO05D001545 9.9e-50 200.3 130 76.2
BcaC01g00521 Brassica carinata HOM05D000315 ORTHO05D001545 1.3e-49 199.9 131 74.8
Carub.0007s0443 Capsella rubella HOM05D000228 ORTHO05D001545 1.3e-49 199.9 131 72.5
Eucgr.I02304 Eucalyptus grandis HOM05D000228 ORTHO05D001545 1.7e-49 199.5 130 73.1
arahy.Tifrunner.gnm1.ann1.FVA0CM Arachis hypogaea HOM05D000228 ORTHO05D001545 2.2e-49 199.1 131 75.6
arahy.Tifrunner.gnm1.ann1.XNR9AR Arachis hypogaea HOM05D000228 ORTHO05D001545 2.2e-49 199.1 131 75.6
AT4G35800 Arabidopsis thaliana HOM05D000228 ORTHO05D001545 6.4e-49 197.6 131 71.0
MBI11_g09467_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D001545 6.4e-49 197.6 130 71.5
MBI19_g46471_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D001545 6.4e-49 197.6 130 71.5
CDE04G2464 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 8.4e-49 197.2 130 71.5
BcaC01g00522 Brassica carinata HOM05D000228 ORTHO05D001545 2.4e-48 195.7 131 72.5
A08p21640 Brassica napus HOM05D000228 ORTHO05D001545 2.4e-48 195.7 131 72.5
BolC3t20350H Brassica oleracea HOM05D000228 ORTHO05D001545 2.4e-48 195.7 131 72.5
BraA08t34114Z Brassica rapa HOM05D000228 ORTHO05D001545 2.4e-48 195.7 131 72.5
Hund16621 Selenicereus undatus HOM05D000228 ORTHO05D001545 2.4e-48 195.7 130 73.1
HPP92_014402 Vanilla planifolia HOM05D000228 ORTHO05D001545 2.4e-48 195.7 131 73.3
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 4.1e-48 194.9 117 78.6
CARHR244170 Cardamine hirsuta HOM05D000228 ORTHO05D001545 4.1e-48 194.9 131 70.2
C03p80930 Brassica napus HOM05D000228 ORTHO05D001545 7.1e-48 194.1 131 71.8
Eucgr.F01570 Eucalyptus grandis HOM05D000228 ORTHO05D001545 9.2e-48 193.7 130 72.3
GSVIVG01008740001 Vitis vinifera HOM05D000228 ORTHO05D001545 1.6e-47 193.0 160 61.9
AUR62026224 Chenopodium quinoa HOM05D000228 ORTHO05D001545 2.7e-47 192.2 130 70.8
AUR62026407 Chenopodium quinoa HOM05D000228 ORTHO05D001545 2.7e-47 192.2 130 70.8
Ah.03g134280 Amaranthus hybridus HOM05D000228 ORTHO05D001545 4.6e-47 191.4 130 70.0
MD02G1123300 Malus domestica HOM05D000228 ORTHO05D001545 6.0e-47 191.0 130 68.5
BolC8t48523H Brassica oleracea HOM05D000228 ORTHO05D001545 7.8e-47 190.7 132 73.5
Zm00001eb416050 Zea mays HOM05D000228 ORTHO05D001545 5.1e-46 188.0 130 71.5
SGA_v2.0_scaffold116G32283 Striga asiatica HOM05D000228 ORTHO05D001545 1.1e-45 186.8 154 66.2
EL10Ac6g13333 Beta vulgaris HOM05D000228 ORTHO05D001545 2.5e-45 185.7 132 68.9
CSS0034780 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 4.3e-45 184.9 130 72.3
Actinidia17402 Actinidia chinensis HOM05D000228 ORTHO05D001545 7.3e-45 184.1 124 70.2
ATR0661G313 Amborella trichopoda HOM05D000228 ORTHO05D001545 1.6e-44 183.0 132 68.2
Dinv40146 Davidia involucrata HOM05D000228 ORTHO05D001545 1.6e-44 183.0 130 70.8
SEGI_24851 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 1.6e-44 183.0 132 68.2
CSS0036491 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 2.1e-44 182.6 130 71.5
Os05g0151000 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D001545 6.2e-44 181.0 131 71.0
vmacro20497 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 6.2e-44 181.0 129 68.2
Rhsim10G0205500 Rhododendron simsii HOM05D000228 ORTHO05D001545 2.4e-43 179.1 133 66.2
ECA233G5495 Erigeron canadensis HOM05D000228 ORTHO05D001545 6.9e-43 177.6 130 70.8
Mapoly0070s0048 Marchantia polymorpha HOM05D000228 ORTHO05D001545 7.6e-42 174.1 132 63.6
Aqoxy5G00747 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 1.7e-41 172.9 132 64.4
A01p02890 Brassica napus HOM05D000228 ORTHO05D001545 2.9e-41 172.2 131 66.4
BraA01t00274Z Brassica rapa HOM05D000315 ORTHO05D001545 2.9e-41 172.2 131 66.4
FvH4_1g11070 Fragaria vesca HOM05D000228 ORTHO05D001545 1.1e-40 170.2 130 63.1
Pp3c14_14540 Physcomitrium patens HOM05D000228 ORTHO05D001545 1.9e-40 169.5 134 61.9
BcaNung04874 Brassica carinata HOM05D000228 ORTHO05D001545 2.4e-40 169.1 132 64.4
BcaC07g38102 Brassica carinata HOM05D000228 ORTHO05D001545 4.2e-40 168.3 132 67.4
Ah.02g129100 Amaranthus hybridus HOM05D000228 ORTHO05D001545 9.3e-40 167.2 130 63.1
BcaNung00792 Brassica carinata HOM05D000228 ORTHO05D001545 1.6e-39 166.4 130 63.1
Pp3c1_32300 Physcomitrium patens HOM05D000228 ORTHO05D001545 1.6e-39 166.4 134 61.9
GSVIVG01005195001 Vitis vinifera HOM05D000315 ORTHO05D000527 3.5e-39 165.2 120 66.7
C01p03210 Brassica napus HOM05D000228 ORTHO05D001545 5.1e-38 161.4 130 62.3
CBR_g42147 Chara braunii HOM05D000228 ORTHO05D001545 3.3e-37 158.7 134 60.4
CSS0032530 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 3.6e-36 155.2 130 63.1
SGA_v2.0_scaffold15G07314 Striga asiatica HOM05D000228 ORTHO05D001545 8.1e-36 154.1 130 60.8
FAN28G1830 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.8e-35 152.9 121 62.8
arahy.Tifrunner.gnm1.ann1.9K73PE Arachis hypogaea HOM05D000228 ORTHO05D001545 2.4e-32 142.5 130 59.2
arahy.Tifrunner.gnm1.ann1.FL0A4X Arachis hypogaea HOM05D000228 ORTHO05D001545 4.2e-32 141.7 130 58.5
ECA233G0514 Erigeron canadensis HOM05D000228 ORTHO05D001545 2.1e-31 139.4 119 63.0
arahy.Tifrunner.gnm1.ann1.BXI6FM Arachis hypogaea HOM05D000228 ORTHO05D001545 1.3e-30 136.7 130 56.9
CDE02G1347 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 6.7e-30 134.4 130 54.6
arahy.Tifrunner.gnm1.ann1.J6X5FL Arachis hypogaea HOM05D000228 ORTHO05D001545 1.5e-29 133.3 140 53.6
SMO203G0153 Selaginella moellendorffii HOM05D000228 ORTHO05D001545 4.3e-29 131.7 148 48.6
arahy.Tifrunner.gnm1.ann1.32E6CA Arachis hypogaea HOM05D000228 ORTHO05D001545 1.3e-28 130.2 107 55.1
FAN01G0491 Fragaria x ananassa HOM05D000331 ORTHO05D013259 1.3e-28 130.2 118 55.9
FAN26G2692 Fragaria x ananassa HOM05D000331 ORTHO05D013259 1.3e-28 130.2 118 55.9
BcaNung05725 Brassica carinata HOM05D000228 ORTHO05D001545 2.1e-28 129.4 130 51.5
FAN24G3088 Fragaria x ananassa HOM05D000331 ORTHO05D013259 4.8e-28 128.3 118 55.1
FAN26G2926 Fragaria x ananassa HOM05D000228 ORTHO05D001545 8.1e-28 127.5 103 61.2
FAN19G2229 Fragaria x ananassa HOM05D000228 ORTHO05D013259 2.4e-27 125.9 109 57.8
ECA233G2080 Erigeron canadensis HOM05D000228 ORTHO05D001545 4.0e-27 125.2 103 64.1
FAN23G0813 Fragaria x ananassa HOM05D000228 ORTHO05D001545 4.0e-27 125.2 102 61.8
MBI19_g41372_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D001545 5.3e-27 124.8 102 62.7
arahy.Tifrunner.gnm1.ann1.248CB6 Arachis hypogaea HOM05D000228 ORTHO05D001545 6.9e-27 124.4 107 51.4
FAN19G2586 Fragaria x ananassa HOM05D000228 ORTHO05D001545 9.0e-27 124.0 102 60.8
Lj4C226G8 Lonicera japonica HOM05D000228 ORTHO05D001545 1.7e-25 119.8 101 57.4
unitig_0.g551 Utricularia gibba HOM05D000228 ORTHO05D001545 8.4e-25 117.5 61 86.9
Ciclev10001675m.g Citrus clementina HOM05D000228 ORTHO05D001545 9.3e-24 114.0 109 55.0
CSS0008034 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 4.3e-21 105.1 68 75.0
MCO15G374 Micromonas commoda HOM05D000228 ORTHO05D001545 1.1e-13 80.5 133 38.3
Actinidia37951 Actinidia chinensis HOM05D000228 ORTHO05D001545 6.9e-11 71.2 40 77.5
Cre16.g680900 Chlamydomonas reinhardtii HOM05D000228 ORTHO05D001545 2.6e-10 69.3 133 32.3
Oeu012551.1 Olea europaea HOM05D000228 ORTHO05D001545 1.8e-06 56.6 28 85.7
SalBow5G1077 Salvia bowleyana HOM05D000228 ORTHO05D001545 6.7e-06 54.7 28 89.3
SalBow5G2035 Salvia bowleyana HOM05D000228 ORTHO05D001545 8.7e-06 54.3 28 85.7


User provided reference genes

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