Gene: Sopen02g027960

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g027960
  • Transcript Identifier Sopen02g027960.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 50598259-50605369 : positive

Gene Family Information

  • ID HOM05D000228
  • #Genes/#Species 1809/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g027960.1

Descriptions

  • Description Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II | the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit. | RNA polymerase II large subunit (NRPB1) | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: transcription, transcription from RNA polymerase II promoter | LOCATED IN: nucleus, chloroplast, DNA-directed RNA polymerase II, core complex, vacuole | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal , RNA polymerase, alpha subunit , RNA polymerase II, heptapeptide repeat, eukaryotic , RNA polymerase Rpb1, domain 7 , RNA polymerase Rpb1, domain 3 , RNA polymerase Rpb1, domain 1 , RNA polymerase Rpb1, domain 4 , RNA polymerase Rpb1, domain 5 , RNA polymerase Rpb1, domain 6 | BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007080 RNA polymerase Rpb1, domain 1
IPR000722 RNA polymerase, alpha subunit
IPR006592 RNA polymerase, N-terminal
IPR044893 RNA polymerase Rpb1, clamp domain superfamily
Mapman id Description
35.1 not assigned.annotated