Gene: Pp3c1_32300

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c1_32300
  • Transcript Identifier Pp3c1_32300V3.1
  • Gene Type Coding gene
  • Location Chr01 : 22741361-22748779 : positive

Gene Family Information

  • ID HOM05D000228
  • #Genes/#Species 1809/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c1_32300V3.1
  • pacid 32966972
  • alias Phpat.001G129100
  • alias Phypa_93853
  • alias Pp1s249_64V6
  • uniprot A0A2K1LAK1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006366
IEA
GOA Databasetranscription by RNA polymerase II
GO:0006366
IEA
InterProtranscription by RNA polymerase II
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G35800
GO:0001055
IBA
GOA DatabaseRNA polymerase II activity
GO:0003899
IBA
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT4G35800
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G35800
GO:0005665
IBA
GOA DatabaseRNA polymerase II, core complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007081 RNA polymerase Rpb1, domain 5
IPR044893 RNA polymerase Rpb1, clamp domain superfamily
IPR007083 RNA polymerase Rpb1, domain 4
IPR038593 RNA polymerase Rpb1, domain 7 superfamily
IPR006592 RNA polymerase, N-terminal
IPR042102 RNA polymerase Rpb1, domain 3 superfamily
IPR007073 RNA polymerase Rpb1, domain 7
IPR000684 RNA polymerase II, heptapeptide repeat, eukaryotic
IPR007075 RNA polymerase Rpb1, domain 6
IPR000722 RNA polymerase, alpha subunit
IPR038120 RNA polymerase Rpb1, funnel domain superfamily
IPR007080 RNA polymerase Rpb1, domain 1
IPR007066 RNA polymerase Rpb1, domain 3
Mapman id Description
15.1.2.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic components.subunit 1