Gene: COL.COLO4_22497
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_22497
- Transcript Identifier COL.rna21245
- Gene Type Coding gene
- Location AWUE01017978.1 : 87619-95042 : positive
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D001545
- #Genes/#Species 391/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid rna21245
- GenBank OMO83437.1
- id gene22469
- gene_name COLO4_22497
- uniprot A0A1R3ILI5
Descriptions
- Description RNA polymerase II, heptapeptide repeat, eukaryotic
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006366 | IEA | GOA Database | transcription by RNA polymerase II | |
| GO:0006366 | IEA | InterPro | transcription by RNA polymerase II |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G35800 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G35800 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT4G35800 |
| GO:0005665 | ISO | PLAZA Integrative Orthology | RNA polymerase II, core complex | AT4G35800 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000684 | RNA polymerase II, heptapeptide repeat, eukaryotic |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR007080 | RNA polymerase Rpb1, domain 1 |
| IPR007073 | RNA polymerase Rpb1, domain 7 |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR006592 | RNA polymerase, N-terminal |
| IPR007075 | RNA polymerase Rpb1, domain 6 |
| IPR038593 | RNA polymerase Rpb1, domain 7 superfamily |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| IPR007066 | RNA polymerase Rpb1, domain 3 |
| Mapman id | Description |
|---|---|
| 15.1.2.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic components.subunit 1 |