Gene: Nitab4.5_0006892g0040
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0006892g0040
- Transcript Identifier Nitab4.5_0006892g0040.1
- Gene Type Coding gene
- Location Nitab4.5_0006892 : 25978-33955 : negative
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D001545
- #Genes/#Species 391/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0006892g0040.1
- SR1-identifier Nta04g30530.1
Descriptions
- Description RNA polymerase II, heptapeptide repeat, eukaryotic, RNA polymerase, alpha subunit, RNA polymerase Rpb1, domain 3, RNA polymerase Rpb1, domain 4, RNA polymerase Rpb1, domain 1, RNA polymerase Rpb1, domain 5, RNA polymerase, N-terminal, RNA polymerase Rpb1, domain 7
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006366 | IEA | InterPro | transcription by RNA polymerase II |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G35800 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G35800 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT4G35800 |
| GO:0005665 | ISO | PLAZA Integrative Orthology | RNA polymerase II, core complex | AT4G35800 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007073 | RNA polymerase Rpb1, domain 7 |
| IPR007080 | RNA polymerase Rpb1, domain 1 |
| IPR006592 | RNA polymerase, N-terminal |
| IPR007066 | RNA polymerase Rpb1, domain 3 |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| IPR038593 | RNA polymerase Rpb1, domain 7 superfamily |
| IPR000684 | RNA polymerase II, heptapeptide repeat, eukaryotic |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| Mapman id | Description |
|---|---|
| 15.1.2.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic components.subunit 1 |