Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 5.6e-262 907.1 478 100.0
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 2.0e-243 845.5 471 93.6
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.6e-224 782.7 453 92.5
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 1.4e-199 699.9 447 84.3
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 4.4e-182 641.7 422 83.6
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 6.4e-157 558.1 447 66.0
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 7.3e-153 544.7 469 64.6
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 1.1e-151 540.8 477 63.5
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 1.4e-151 540.4 469 64.6
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 1.5e-150 537.0 431 67.3
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 8.3e-149 531.2 446 66.6
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 8.3e-149 531.2 448 66.7
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.4e-148 530.4 443 65.7
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 1.9e-148 530.0 451 66.5
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.9e-148 530.0 443 65.2
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 3.9e-146 522.3 443 65.0
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 5.1e-146 521.9 444 63.7
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 5.1e-146 521.9 445 64.9
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 1.5e-145 520.4 444 65.1
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.3e-145 518.8 446 66.4
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 5.6e-145 518.5 432 66.9
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 7.3e-145 518.1 443 64.1
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 2.1e-144 516.5 449 66.1
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 2.8e-144 516.2 442 64.7
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 4.7e-144 515.4 440 62.0
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 6.2e-144 515.0 451 62.7
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 1.1e-143 514.2 474 61.2
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 1.4e-143 513.8 431 65.4
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.4e-143 513.8 479 61.0
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 3.1e-143 512.7 442 61.1
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 4.0e-143 512.3 440 64.3
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 8.9e-143 511.1 434 64.1
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.0e-142 510.0 449 63.9
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 2.6e-142 509.6 438 64.8
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.7e-141 505.8 446 60.1
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 4.9e-141 505.4 437 64.3
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 8.4e-141 504.6 433 64.2
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 8.4e-141 504.6 466 61.6
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 2.4e-140 503.1 443 64.3
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 2.4e-140 503.1 452 62.4
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 3.2e-140 502.7 441 64.4
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 4.1e-140 502.3 443 62.8
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 4.1e-140 502.3 444 63.3
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 5.4e-140 501.9 441 63.0
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 2.7e-139 499.6 463 60.7
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 3.5e-139 499.2 435 61.1
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 6.0e-139 498.4 446 59.4
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.3e-138 497.3 449 63.7
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 1.7e-138 496.9 433 64.4
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 6.6e-138 495.0 436 63.1
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 1.9e-137 493.4 456 61.8
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 4.3e-137 492.3 433 61.7
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 7.3e-137 491.5 437 61.6
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.8e-135 486.9 424 64.4
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 4.0e-135 485.7 435 60.2
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 5.2e-135 485.3 439 61.7
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 3.4e-134 482.6 433 60.5
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 4.2e-132 475.7 451 59.6
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 9.3e-132 474.6 440 57.7
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.2e-131 474.2 440 60.0
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 1.3e-130 470.7 434 61.5
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.3e-128 464.2 432 63.0
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 9.0e-127 458.0 427 55.3
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 9.0e-127 458.0 460 53.5
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 5.8e-126 455.3 437 58.4
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 2.2e-125 453.4 431 54.8
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 3.8e-125 452.6 443 54.2
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 4.9e-125 452.2 431 54.8
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 3.2e-124 449.5 438 59.4
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 5.4e-124 448.7 450 60.0
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.2e-123 447.6 434 57.8
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 1.6e-123 447.2 433 59.1
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 2.1e-123 446.8 451 58.3
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 4.6e-123 445.7 432 54.2
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 5.1e-122 442.2 496 51.2
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 8.7e-122 441.4 441 58.3
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.1e-119 434.5 432 53.0
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 9.9e-118 427.9 429 52.2
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 1.7e-117 427.2 469 49.9
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 1.4e-116 424.1 437 52.4
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 5.5e-116 422.2 440 51.6
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 7.1e-116 421.8 462 51.1
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 7.1e-116 421.8 601 46.8
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 7.9e-115 418.3 346 67.3
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.3e-114 417.5 321 65.7
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 3.7e-112 409.5 431 56.8
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 3.4e-110 402.9 387 61.2
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 3.8e-109 399.4 387 61.0
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 7.1e-108 395.2 315 68.3
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 3.0e-106 389.8 356 62.4
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 5.1e-106 389.0 439 49.7
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 1.8e-98 364.0 367 61.0
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 3.0e-98 363.2 398 49.7
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 1.6e-96 357.5 331 61.9
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 3.4e-94 349.7 385 56.6
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 3.0e-90 336.7 328 61.3
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 5.0e-85 319.3 410 48.0
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 3.2e-84 316.6 390 47.2
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 8.2e-80 302.0 264 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.8e-77 293.1 393 46.8
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.1e-75 287.3 280 58.6
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 2.0e-73 280.8 270 54.8
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.5e-57 228.0 410 38.3
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 6.3e-56 222.6 284 45.1
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.7e-53 214.5 332 44.6
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 2.0e-49 201.1 326 42.9
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 1.7e-48 198.0 319 42.3
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 3.9e-45 186.8 177 51.4
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.5e-44 184.9 255 47.1
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.9e-36 157.9 159 61.0
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 7.3e-36 156.0 102 72.5
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 7.3e-36 156.0 98 73.5
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.6e-35 154.8 146 57.5
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.0e-33 147.9 97 72.2
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 1.6e-30 138.3 178 50.0
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.6e-30 136.7 178 56.7
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 1.6e-27 128.3 134 59.0
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.2e-22 112.1 100 57.0
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 7.3e-20 102.8 103 52.4
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.8e-18 98.2 144 40.3
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 4.0e-18 97.1 115 45.2
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 9.9e-17 92.4 126 45.2
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 8.4e-16 89.4 57 71.9
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.5e-14 84.0 336 25.6
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 6.0e-14 83.2 45 77.8
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 5.1e-13 80.1 56 75.0
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.9e-12 78.2 83 44.6
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 1.3e-11 75.5 49 69.4
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 1.3e-11 75.5 49 69.4
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 3.1e-10 70.9 41 85.4
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 3.1e-10 70.9 50 60.0
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 2.6e-09 67.8 111 37.8
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 1.3e-08 65.5 52 55.8
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 2.9e-08 64.3 57 56.1
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 7.1e-07 59.7 33 81.8
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 4.6e-06 57.0 61 52.5
SEGI_34663 Sequoiadendron giganteum HOM05D002411 ORTHO05D002564 6.0e-06 56.6 89 33.7
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 7.9e-06 56.2 87 39.1


User provided reference genes

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