Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.6e-106 389.4 200 100.0
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 1.2e-93 346.7 200 91.0
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 6.9e-81 304.3 200 82.5
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.2e-80 303.5 198 79.8
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.9e-76 288.5 200 78.5
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.5e-75 286.6 200 77.0
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 3.8e-55 218.8 199 62.3
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 7.2e-54 214.5 190 62.6
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 4.4e-51 205.3 194 59.8
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 5.7e-51 204.9 191 60.7
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 7.7e-48 194.5 190 58.4
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 1.0e-47 194.1 187 59.9
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 1.0e-47 194.1 101 92.1
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 8.6e-47 191.0 194 57.7
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.5e-46 190.3 186 60.2
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 4.2e-46 188.7 186 59.7
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 7.2e-46 188.0 189 60.3
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 9.5e-46 187.6 185 59.5
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 2.8e-45 186.0 193 60.6
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 8.0e-45 184.5 187 59.4
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.4e-44 183.7 190 57.4
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 2.3e-44 183.0 197 54.3
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 4.0e-44 182.2 207 55.1
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 4.0e-44 182.2 184 56.0
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 5.2e-44 181.8 203 54.2
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 5.2e-44 181.8 190 58.4
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 5.2e-44 181.8 191 59.2
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.5e-43 180.3 189 55.6
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.5e-43 180.3 192 57.8
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.0e-43 179.9 185 57.8
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 2.0e-43 179.9 161 60.2
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 3.4e-43 179.1 190 57.4
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.4e-43 178.7 185 57.3
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 9.8e-43 177.6 132 70.5
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 3.7e-42 175.6 199 55.3
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 4.9e-42 175.3 190 56.3
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.8e-41 173.3 122 73.0
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.8e-41 173.3 186 54.8
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.8e-41 173.3 186 54.8
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 2.4e-41 172.9 197 53.8
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 2.4e-41 172.9 190 56.8
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 3.1e-41 172.6 186 55.9
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 5.4e-41 171.8 187 55.6
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 9.2e-41 171.0 153 58.2
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 9.2e-41 171.0 153 58.2
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 1.2e-40 170.6 151 61.6
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 2.0e-40 169.9 186 54.3
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.5e-40 168.7 194 53.1
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.5e-40 168.7 119 68.9
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.5e-40 168.7 119 68.9
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 5.9e-40 168.3 195 52.8
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 5.9e-40 168.3 166 57.8
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 7.8e-40 167.9 142 63.4
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 7.8e-40 167.9 212 51.4
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 7.8e-40 167.9 189 55.0
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.3e-39 166.4 178 57.3
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.3e-39 166.4 186 53.8
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.3e-39 166.4 186 53.8
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 2.3e-39 166.4 190 53.7
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 3.8e-39 165.6 124 69.4
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 6.6e-39 164.9 173 57.8
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 6.6e-39 164.9 186 54.8
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.5e-38 163.7 202 50.5
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.9e-38 163.3 200 52.5
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 5.6e-38 161.8 189 50.8
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 7.3e-38 161.4 190 54.2
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.2e-37 160.6 189 50.8
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 1.2e-37 160.6 122 68.0
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 2.1e-37 159.8 140 62.9
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 2.8e-37 159.5 186 52.7
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 3.6e-37 159.1 130 64.6
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 3.6e-37 159.1 199 49.2
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 4.7e-37 158.7 100 75.0
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 6.1e-37 158.3 201 47.8
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 8.0e-37 157.9 113 69.0
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 1.0e-36 157.5 205 50.2
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.0e-36 156.0 208 50.0
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 5.2e-36 155.2 187 50.8
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 6.8e-36 154.8 205 49.8
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 6.8e-36 154.8 149 58.4
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 8.9e-36 154.5 197 51.3
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 8.9e-36 154.5 191 50.3
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 8.9e-36 154.5 121 68.6
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.2e-35 154.1 175 52.6
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.0e-35 153.3 180 52.2
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 2.6e-35 152.9 197 50.8
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 5.8e-35 151.8 212 47.6
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 7.5e-35 151.4 196 50.0
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 7.5e-35 151.4 113 68.1
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 7.5e-35 151.4 175 52.0
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 7.5e-35 151.4 175 52.0
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 9.8e-35 151.0 122 65.6
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 9.8e-35 151.0 113 68.1
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 9.8e-35 151.0 202 51.5
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.3e-34 150.6 205 46.8
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.3e-34 150.6 185 50.3
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 1.7e-34 150.2 185 50.3
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.7e-34 150.2 169 56.8
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 2.9e-34 149.4 188 48.9
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 2.9e-34 149.4 180 53.9
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.9e-34 149.4 141 61.0
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 3.7e-34 149.1 173 51.4
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 8.3e-34 147.9 152 57.9
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 8.3e-34 147.9 187 50.8
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 5.4e-33 145.2 174 52.3
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 5.4e-33 145.2 183 49.7
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 5.4e-33 145.2 132 62.1
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 3.5e-32 142.5 187 48.7
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 6.0e-32 141.7 129 64.3
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 6.0e-32 141.7 129 62.0
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 7.8e-32 141.4 170 54.1
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.7e-31 140.2 206 45.1
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 2.3e-31 139.8 197 51.8
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 3.9e-31 139.0 173 49.7
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 8.6e-31 137.9 183 49.2
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.5e-30 137.1 91 72.5
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.5e-30 137.1 138 56.5
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 2.5e-30 136.3 153 54.9
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 3.3e-30 136.0 209 47.4
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 3.3e-30 136.0 190 47.4
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 3.3e-30 136.0 218 46.8
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 4.3e-30 135.6 204 44.6
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 4.3e-30 135.6 201 45.3
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 7.3e-30 134.8 204 45.1
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 7.3e-30 134.8 204 45.1
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 7.3e-30 134.8 170 51.2
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-29 134.0 173 50.9
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.2e-29 134.0 163 49.1
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 1.6e-29 133.7 136 61.0
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.6e-29 133.7 169 50.9
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 2.1e-29 133.3 226 42.9
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.8e-29 132.9 128 56.2
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.6e-29 132.5 202 49.5
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 4.7e-29 132.1 223 44.8
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 8.0e-29 131.3 128 56.2
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 3.1e-28 129.4 205 45.9
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 3.1e-28 129.4 175 50.9
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 4.0e-28 129.0 226 41.6
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 1.2e-27 127.5 193 48.7
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.2e-27 127.5 184 47.8
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 2.0e-27 126.7 207 45.9
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.6e-27 126.3 187 46.5
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 3.4e-27 125.9 190 47.4
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.4e-27 125.9 221 43.0
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 3.4e-27 125.9 172 49.4
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 4.4e-27 125.6 198 46.0
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 7.5e-27 124.8 187 45.5
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 1.3e-26 124.0 207 45.9
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.7e-26 122.5 208 47.6
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.7e-26 122.5 208 47.6
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 4.9e-26 122.1 197 46.7
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.1e-25 120.9 97 64.9
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 5.4e-25 118.6 101 60.4
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 5.4e-25 118.6 101 60.4
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 7.8e-24 114.8 104 62.5
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.7e-23 113.6 187 44.9
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 3.0e-23 112.8 121 57.0
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 3.0e-23 112.8 121 57.0
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.1e-22 110.9 170 45.9
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 1.5e-22 110.5 129 51.9
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 4.3e-22 109.0 61 80.3
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 7.3e-22 108.2 61 77.0
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.2e-21 107.5 119 53.8
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.2e-21 107.5 119 53.8
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 1.2e-21 107.5 139 51.1
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.6e-21 107.1 80 67.5
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.3e-20 103.2 56 83.9
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.2e-19 100.9 189 40.7
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.2e-16 90.9 173 43.4
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 1.0e-15 87.8 179 39.7
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 2.5e-14 83.2 84 57.1
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 4.3e-14 82.4 172 38.4
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 2.1e-13 80.1 38 84.2
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 1.9e-09 67.0 177 37.3
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 9.2e-09 64.7 177 36.7
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 1.6e-08 63.9 66 53.0
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.5e-08 62.8 142 35.9
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 3.9e-07 59.3 82 48.8
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 3.9e-07 59.3 82 48.8


User provided reference genes

Program Settings