Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.0e-268 928.7 540 100.0
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 2.6e-239 832.0 541 91.5
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.1e-229 800.0 541 88.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 9.3e-197 690.6 539 75.9
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 2.2e-190 669.5 465 90.3
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.2e-190 669.5 544 73.9
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 8.7e-187 657.5 556 74.5
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.4e-184 649.4 541 70.6
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 5.8e-183 644.8 542 72.3
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.3e-182 643.7 543 73.1
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.2e-181 639.0 545 70.3
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 7.1e-181 637.9 545 69.9
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.3e-179 632.9 542 70.5
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 2.5e-178 629.4 545 70.5
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.5e-178 629.4 540 70.6
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 3.3e-178 629.0 557 71.8
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.8e-177 625.9 544 67.8
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.8e-177 625.9 545 72.8
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.1e-176 624.0 542 69.6
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-176 623.6 545 69.2
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.1e-176 622.5 541 68.6
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.5e-175 620.2 541 69.9
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.0e-175 619.8 543 68.0
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.0e-175 619.8 541 73.6
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 5.5e-173 611.7 551 67.2
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 7.2e-173 611.3 543 70.2
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 2.3e-171 606.3 538 74.0
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 3.0e-171 605.9 541 67.7
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.4e-168 596.3 542 66.4
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.1e-168 595.5 544 70.0
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 9.1e-168 594.3 549 65.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.1e-168 594.3 541 68.8
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 7.7e-167 591.3 542 69.6
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.9e-166 589.3 553 68.7
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.4e-165 587.0 542 67.0
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.2e-165 585.5 530 66.6
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 3.0e-163 579.3 546 65.8
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 2.0e-162 576.6 544 64.7
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.3e-162 575.9 546 68.7
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.3e-162 575.9 543 67.6
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 7.4e-162 574.7 564 65.4
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.7e-161 573.5 546 65.2
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.2e-161 573.2 587 62.0
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.2e-161 573.2 587 62.0
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 3.1e-160 569.3 553 66.0
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.2e-159 567.4 543 68.7
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.5e-159 565.5 555 66.8
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 7.7e-159 564.7 555 64.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.2e-158 563.1 555 66.3
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.2e-156 557.4 542 67.2
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 3.6e-156 555.8 555 66.3
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 3.0e-155 552.7 550 67.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 8.8e-155 551.2 543 63.5
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 7.4e-154 548.1 544 68.2
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 7.4e-154 548.1 530 67.5
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 9.7e-154 547.7 542 63.5
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.7e-153 545.8 543 64.5
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.7e-153 545.8 578 63.5
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.4e-152 543.1 504 67.3
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.1e-152 542.3 557 65.0
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.3e-152 542.0 529 62.9
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.2e-151 540.8 544 63.2
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 2.6e-151 539.7 504 66.9
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 5.9e-151 538.5 554 60.6
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.2e-150 536.6 544 64.0
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 9.4e-149 531.2 496 66.1
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.6e-148 530.4 566 64.5
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.7e-148 529.6 543 66.7
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.8e-147 526.9 544 64.9
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.8e-147 526.9 545 63.9
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 4.0e-147 525.8 541 64.3
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.0e-146 523.5 547 64.9
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.7e-145 520.4 545 66.2
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.8e-145 519.6 576 55.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.1e-144 517.7 576 60.4
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.4e-144 517.3 551 64.1
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.1e-144 515.8 586 59.4
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 4.1e-144 515.8 554 57.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 5.3e-144 515.4 531 60.5
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 7.0e-144 515.0 560 61.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.0e-143 513.5 539 58.6
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.7e-143 513.1 516 66.7
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 7.7e-143 511.5 514 64.4
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.2e-142 510.0 361 75.1
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.2e-142 510.0 547 56.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.2e-142 510.0 584 58.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.8e-142 509.2 550 58.2
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 5.0e-142 508.8 545 61.3
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.8e-139 500.4 552 58.2
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 5.2e-139 498.8 560 63.9
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 9.8e-138 494.6 551 63.0
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 9.8e-138 494.6 551 63.0
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.3e-137 494.2 549 63.0
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.3e-137 491.9 577 58.4
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 6.3e-137 491.9 523 64.4
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.8e-136 490.3 522 64.0
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 7.0e-136 488.4 543 63.2
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.6e-135 487.3 486 63.2
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 3.5e-135 486.1 549 62.5
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 5.9e-135 485.3 551 62.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.3e-134 484.2 548 64.2
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.2e-132 477.6 547 62.5
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.5e-130 470.7 541 57.7
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 4.9e-129 465.7 552 57.1
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.9e-129 465.7 517 59.4
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-128 464.5 544 59.0
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 4.5e-127 459.1 838 42.1
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.5e-125 454.1 551 59.3
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 4.3e-125 452.6 569 53.3
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.1e-124 448.7 542 59.4
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 3.4e-122 443.0 548 60.0
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.7e-121 440.7 571 53.8
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 6.4e-121 438.7 496 62.3
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.6e-119 434.1 539 54.0
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 6.0e-119 432.2 537 54.4
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.5e-117 427.6 546 49.6
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.8e-116 423.3 468 62.8
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 4.7e-116 422.5 485 57.9
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 8.3e-113 411.8 537 53.6
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 8.3e-113 411.8 537 53.6
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 8.3e-105 385.2 414 68.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 8.6e-102 375.2 326 63.2
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.1e-100 370.5 582 45.2
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.1e-99 368.2 554 46.4
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 3.1e-99 366.7 542 44.5
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 5.2e-99 365.9 548 46.0
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.3e-97 361.3 553 48.3
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 6.4e-97 359.0 548 46.0
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 7.1e-96 355.5 443 60.3
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 7.1e-96 355.5 519 53.8
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.7e-95 353.6 539 46.4
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 4.6e-95 352.8 548 45.6
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-94 350.9 549 46.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.9e-94 349.7 539 46.2
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-93 347.4 548 45.6
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.2e-88 330.1 426 53.5
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 7.1e-88 328.9 365 66.3
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 4.6e-87 326.2 195 79.0
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.8e-78 297.7 321 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.9e-77 294.3 354 48.0
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 5.5e-72 276.2 361 61.2
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 4.9e-65 253.1 312 55.4
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.5e-64 249.6 333 48.6
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.4e-59 234.2 366 55.7
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.8e-52 209.9 508 37.8
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.9e-48 198.0 237 52.3
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.8e-46 191.4 350 46.0
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.0e-38 165.6 183 61.7
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-35 155.2 244 43.0
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.4e-35 155.2 101 68.3
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 7.2e-32 142.9 178 61.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 4.5e-26 123.6 292 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.2e-22 110.2 140 42.1
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.2e-21 109.0 89 77.5
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 3.4e-21 107.5 213 43.7
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.3e-20 105.5 315 31.4
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-19 102.4 199 47.2
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 9.1e-19 99.4 67 77.6
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.1e-19 99.4 67 77.6
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.2e-18 99.0 240 37.9
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.7e-17 95.1 170 47.6
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 6.6e-17 93.2 56 80.4
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 2.5e-16 91.3 54 68.5
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 4.2e-16 90.5 129 51.2
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 5.5e-16 90.1 51 76.5
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.5e-16 89.4 209 39.2
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.8e-15 87.8 111 52.3
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.0e-14 84.3 207 41.5
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.5e-13 82.0 107 51.4
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.7e-12 78.6 97 54.6
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 8.3e-12 76.3 73 63.0
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.4e-11 74.7 59 61.0
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.4e-11 73.6 88 52.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.5e-10 70.9 69 55.1
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.3e-09 68.9 66 53.0
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.5e-08 62.8 122 31.1
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.2e-07 62.4 51 56.9
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 4.0e-06 57.4 93 41.9


User provided reference genes

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