Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004820 Simmondsia chinensis HOM05D001007 ORTHO05D002932 2.5e-110 402.1 205 100.0
Sc23g0004350 Simmondsia chinensis HOM05D001007 ORTHO05D002932 3.0e-63 245.7 257 59.1
EL10Ac2g03639 Beta vulgaris HOM05D001007 ORTHO05D002932 3.2e-57 225.7 257 54.1
Atru.chr12.1185 Acer truncatum HOM05D001007 ORTHO05D002932 1.2e-56 223.8 256 53.1
Dinv12607 Davidia involucrata HOM05D001007 ORTHO05D002932 1.2e-56 223.8 263 52.5
CSS0018446 Camellia sinensis var. sinensis HOM05D001007 ORTHO05D002932 1.0e-55 220.7 263 51.7
MD13G1234200 Malus domestica HOM05D001007 ORTHO05D002932 2.3e-55 219.5 258 52.3
Hund19363 Selenicereus undatus HOM05D001007 ORTHO05D002932 2.3e-55 219.5 257 52.5
MD16G1238700 Malus domestica HOM05D001007 ORTHO05D002932 3.0e-55 219.2 258 52.3
QL11p008827 Quercus lobata HOM05D001007 ORTHO05D002932 3.0e-55 219.2 258 52.3
TAR383G0411 Trochodendron aralioides HOM05D001007 ORTHO05D002932 3.0e-55 219.2 262 51.9
Ciclev10018695m.g Citrus clementina HOM05D001007 ORTHO05D002932 6.7e-55 218.0 258 51.9
Hma1.2p1_0263F.1_g105460 Hydrangea macrophylla HOM05D001007 ORTHO05D002932 6.7e-55 218.0 263 51.0
Nitab4.5_0005105g0010 Nicotiana tabacum HOM05D001007 ORTHO05D002932 6.7e-55 218.0 263 50.2
MSTRG.19396 Avicennia marina HOM05D001007 ORTHO05D002932 8.7e-55 217.6 263 50.2
CiPaw.15G156200 Carya illinoinensis HOM05D001007 ORTHO05D002932 8.7e-55 217.6 258 51.9
Ah.10g033670 Amaranthus hybridus HOM05D001007 ORTHO05D002932 1.1e-54 217.2 259 52.5
Actinidia38524 Actinidia chinensis HOM05D001007 ORTHO05D002932 1.9e-54 216.5 263 51.3
Prupe.1G065000 Prunus persica HOM05D001007 ORTHO05D002932 3.3e-54 215.7 258 51.6
THA.LOC104815315 Tarenaya hassleriana HOM05D001007 ORTHO05D002932 5.7e-54 214.9 258 50.4
GSVIVG01032255001 Vitis vinifera HOM05D001007 ORTHO05D002932 7.4e-54 214.5 262 51.5
Nn5g27075 Nelumbo nucifera HOM05D001007 ORTHO05D002932 1.3e-53 213.8 263 49.8
PSO063G7144 Papaver somniferum HOM05D001007 ORTHO05D002932 1.3e-53 213.8 261 51.7
PSO170G5833 Papaver somniferum HOM05D001007 ORTHO05D002932 1.3e-53 213.8 261 51.7
Gohir.A13G182000 Gossypium hirsutum HOM05D001007 ORTHO05D002932 1.6e-53 213.4 258 51.9
TWI32G0842 Tripterygium wilfordii HOM05D001007 ORTHO05D002932 1.6e-53 213.4 257 51.4
Gohir.D13G185200 Gossypium hirsutum HOM05D001007 ORTHO05D002932 2.2e-53 213.0 258 51.9
Gorai.013G211300 Gossypium raimondii HOM05D001007 ORTHO05D002932 2.2e-53 213.0 258 51.9
Nitab4.5_0005753g0010 Nicotiana tabacum HOM05D001007 ORTHO05D002932 2.2e-53 213.0 263 49.4
Peaxi162Scf00006g03312 Petunia axillaris HOM05D001007 ORTHO05D002932 2.8e-53 212.6 263 49.0
Peaxi162Scf00954g00227 Petunia axillaris HOM05D001007 ORTHO05D002932 2.8e-53 212.6 263 49.8
Manes.18G138900 Manihot esculenta HOM05D001007 ORTHO05D002932 3.7e-53 212.2 258 50.4
Oeu028825.1 Olea europaea HOM05D001007 ORTHO05D002932 3.7e-53 212.2 263 48.7
FvH4_4g06170 Fragaria vesca HOM05D001007 ORTHO05D002932 4.8e-53 211.8 255 51.0
FAN12G0801 Fragaria x ananassa HOM05D001007 ORTHO05D002932 4.8e-53 211.8 255 51.0
FAN22G2217 Fragaria x ananassa HOM05D001007 ORTHO05D002932 4.8e-53 211.8 255 51.0
FAN07G1844 Fragaria x ananassa HOM05D001007 ORTHO05D002932 1.1e-52 210.7 255 51.0
PGR142G2022 Punica granatum HOM05D001007 ORTHO05D002932 1.1e-52 210.7 258 50.4
Rhsim07G0245300 Rhododendron simsii HOM05D001007 ORTHO05D002932 1.1e-52 210.7 263 49.8
Eucgr.C00066 Eucalyptus grandis HOM05D001007 ORTHO05D002932 1.4e-52 210.3 258 49.6
RcHm_v2.0_Chr4g0397751 Rosa chinensis HOM05D001007 ORTHO05D002932 1.4e-52 210.3 258 50.4
Sed0020596 Sechium edule HOM05D001007 ORTHO05D002932 1.4e-52 210.3 254 50.0
PGSC0003DMG400013698 Solanum tuberosum HOM05D001007 ORTHO05D002932 1.4e-52 210.3 263 48.7
Haze_19057 Corylus avellana HOM05D001007 ORTHO05D002932 1.8e-52 209.9 258 50.0
THA.LOC104808911 Tarenaya hassleriana HOM05D001007 ORTHO05D002932 1.8e-52 209.9 258 50.0
Thecc.09G194800 Theobroma cacao HOM05D001007 ORTHO05D002932 2.4e-52 209.5 257 51.0
CANSAT01G0746 Cannabis sativa HOM05D001007 ORTHO05D002932 3.1e-52 209.1 255 49.8
CAN.G106.8 Capsicum annuum HOM05D001007 ORTHO05D002932 3.1e-52 209.1 263 48.7
Potri.006G078000 Populus trichocarpa HOM05D001007 ORTHO05D002932 3.1e-52 209.1 258 49.2
Aqoxy7G02671 Aquilegia oxysepala HOM05D001007 ORTHO05D002932 4.1e-52 208.8 263 48.7
Sopen05g027830 Solanum pennellii HOM05D001007 ORTHO05D002932 4.1e-52 208.8 263 48.3
vmacro22293 Vaccinium macrocarpon HOM05D001007 ORTHO05D002932 4.1e-52 208.8 263 49.4
Cc00_g00180 Coffea canephora HOM05D001007 ORTHO05D002932 5.3e-52 208.4 263 49.4
Cfa020741 Carpinus fangiana HOM05D001007 ORTHO05D002932 6.9e-52 208.0 258 49.6
Rhsim07G0245200 Rhododendron simsii HOM05D001007 ORTHO05D002932 6.9e-52 208.0 263 49.4
PGSC0003DMG400020389 Solanum tuberosum HOM05D001007 ORTHO05D002932 6.9e-52 208.0 263 49.4
arahy.Tifrunner.gnm1.ann1.612ZK0 Arachis hypogaea HOM05D001007 ORTHO05D002932 9.1e-52 207.6 249 49.8
arahy.Tifrunner.gnm1.ann1.N68NTR Arachis hypogaea HOM05D001007 ORTHO05D002932 9.1e-52 207.6 249 49.8
ECA234G1918 Erigeron canadensis HOM05D001007 ORTHO05D002932 9.1e-52 207.6 239 51.5
Thhalv10019987m.g Eutrema salsugineum HOM05D001007 ORTHO05D002932 9.1e-52 207.6 258 49.6
Solyc05g047520.4 Solanum lycopersicum HOM05D001007 ORTHO05D002932 9.1e-52 207.6 263 49.0
AL3G43950 Arabidopsis lyrata HOM05D001007 ORTHO05D002932 1.2e-51 207.2 252 50.8
Cpa.g.sc115.29 Carica papaya HOM05D001007 ORTHO05D002932 1.2e-51 207.2 258 50.0
Dinv26473 Davidia involucrata HOM05D001007 ORTHO05D002932 1.2e-51 207.2 263 49.4
AUR62020712 Chenopodium quinoa HOM05D001007 ORTHO05D002932 1.5e-51 206.8 257 50.2
AUR62028012 Chenopodium quinoa HOM05D001007 ORTHO05D002932 1.5e-51 206.8 257 50.2
Medtr8g101340 Medicago truncatula HOM05D001007 ORTHO05D002932 1.5e-51 206.8 248 50.0
CsaV3_2G009040 Cucumis sativus L. HOM05D001007 ORTHO05D002932 2.0e-51 206.5 258 48.8
HanXRQChr10g0309581 Helianthus annuus HOM05D001007 ORTHO05D002932 2.0e-51 206.5 260 48.5
Sp3g08000 Schrenkiella parvula HOM05D001007 ORTHO05D002932 2.0e-51 206.5 258 50.0
Lju50A17G32 Lonicera japonica HOM05D001007 ORTHO05D002932 2.6e-51 206.1 239 51.5
Oeu062952.1 Olea europaea HOM05D001007 ORTHO05D002932 2.6e-51 206.1 263 48.3
Carub.0003s2734 Capsella rubella HOM05D001007 ORTHO05D002932 3.4e-51 205.7 257 50.2
VMungo0251G0726 Vigna mungo HOM05D001007 ORTHO05D002932 3.4e-51 205.7 249 50.2
A05p39390 Brassica napus HOM05D001007 ORTHO05D002932 4.5e-51 205.3 255 49.8
C05p58420 Brassica napus HOM05D001007 ORTHO05D002932 4.5e-51 205.3 255 49.8
BolC5t34494H Brassica oleracea HOM05D001007 ORTHO05D002932 4.5e-51 205.3 255 49.8
BraA05t22720Z Brassica rapa HOM05D001007 ORTHO05D002932 4.5e-51 205.3 255 49.8
MELO3C003935.2 Cucumis melo HOM05D001007 ORTHO05D002932 4.5e-51 205.3 258 48.4
MBI16_g37217_MAGBIO Magnolia biondii HOM05D001007 ORTHO05D002932 7.7e-51 204.5 263 48.3
Migut.J00836 Erythranthe guttata HOM05D001007 ORTHO05D002932 1.0e-50 204.1 263 46.4
Lj4g0027172 Lotus japonicus HOM05D001007 ORTHO05D002932 1.0e-50 204.1 249 49.0
Ca_17425_v3 Cicer arietinum L. HOM05D001007 ORTHO05D002932 1.3e-50 203.8 248 49.6
Ca_17434_v3 Cicer arietinum L. HOM05D001007 ORTHO05D002932 1.3e-50 203.8 248 49.6
HanXRQChr12g0359191 Helianthus annuus HOM05D001007 ORTHO05D002932 2.2e-50 203.0 260 48.1
Glyma.08G027700 Glycine max HOM05D001007 ORTHO05D002932 3.8e-50 202.2 249 49.0
Sopen12g008680 Solanum pennellii HOM05D001007 ORTHO05D002932 3.8e-50 202.2 263 47.9
TPR.G25490 Trifolium pratense HOM05D001007 ORTHO05D002932 3.8e-50 202.2 248 48.8
Phvul.002G303000 Phaseolus vulgaris HOM05D001007 ORTHO05D002932 5.0e-50 201.8 249 49.0
Solyc12g017860.3 Solanum lycopersicum HOM05D001007 ORTHO05D002932 8.5e-50 201.1 263 47.5
Lalb_Chr16g0390771 Lupinus albus HOM05D001007 ORTHO05D002932 1.1e-49 200.7 248 48.8
AT2G06990 Arabidopsis thaliana HOM05D001007 ORTHO05D002932 1.4e-49 200.3 258 48.4
ATR0626G366 Amborella trichopoda HOM05D001007 ORTHO05D002932 1.9e-49 199.9 263 47.9
CARHR084080 Cardamine hirsuta HOM05D001007 ORTHO05D002932 1.9e-49 199.9 258 48.8
Psat7g021600 Pisum sativum HOM05D001007 ORTHO05D002932 3.2e-49 199.1 248 48.8
Lalb_Chr05g0223741 Lupinus albus HOM05D001007 ORTHO05D002932 4.2e-49 198.7 249 48.6
DCAR_009044 Daucus carota HOM05D001007 ORTHO05D002932 7.2e-49 198.0 277 46.6
SHI03120 Sapria himalayana HOM05D001007 ORTHO05D002932 9.4e-49 197.6 258 48.8
Lsat_1_v5_gn_5_81421 Lactuca sativa HOM05D001007 ORTHO05D002932 3.6e-48 195.7 263 46.4
RhsimUnG0051300 Rhododendron simsii HOM05D001007 ORTHO05D002932 3.0e-47 192.6 233 50.6
Glyma.05G221200 Glycine max HOM05D001007 ORTHO05D002932 2.0e-46 189.9 237 48.5
CDE07G1513 Ceratophyllum demersum HOM05D001007 ORTHO05D002932 4.4e-46 188.7 263 46.0
unitig_22.g6570 Utricularia gibba HOM05D001007 ORTHO05D002932 1.3e-45 187.2 263 44.9
HPP92_020237 Vanilla planifolia HOM05D001007 ORTHO05D002932 2.4e-44 183.0 263 43.3
Os11g0176200 Oryza sativa ssp. japonica HOM05D001007 ORTHO05D002932 3.1e-44 182.6 262 45.0
Zm00001eb337140 Zea mays HOM05D001007 ORTHO05D002932 2.0e-43 179.9 262 43.9
Duzib170G0417 Durio zibethinus HOM05D001007 ORTHO05D002932 3.9e-39 165.6 110 74.5
ClCG11G011450 Citrullus lanatus HOM05D001007 ORTHO05D002932 8.8e-39 164.5 258 43.0
Mapoly0044s0084 Marchantia polymorpha HOM05D001007 ORTHO05D002932 4.4e-38 162.2 264 38.3
Pp3c10_7310 Physcomitrium patens HOM05D001007 ORTHO05D002932 9.7e-38 161.0 263 37.6
SMO358G0351 Selaginella moellendorffii HOM05D001007 ORTHO05D002932 1.1e-36 157.5 263 36.5
Medtr5g069360 Medicago truncatula HOM05D001007 ORTHO05D002932 2.5e-33 146.4 247 40.1
BcaC05g29692 Brassica carinata HOM05D001007 ORTHO05D002932 1.2e-32 144.1 255 41.6
AagrBONN_evm.TU.Sc2ySwM_117.4055 Anthoceros agrestis HOM05D001007 ORTHO05D002932 8.0e-32 141.4 236 35.6
SEGI_09327 Sequoiadendron giganteum HOM05D001007 ORTHO05D002932 7.5e-30 134.8 112 58.9
Sc23g0004700 Simmondsia chinensis HOM05D001007 ORTHO05D002932 2.8e-29 132.9 206 46.6
CAN.G62.8 Capsicum annuum HOM05D000228 ORTHO05D001545 4.1e-28 129.0 93 67.7
Aa31sc441G20 Aethionema arabicum HOM05D001007 ORTHO05D002932 7.0e-28 128.3 258 37.2
Nitab4.5_0000404g0240 Nicotiana tabacum HOM05D001007 ORTHO05D002932 9.1e-28 127.9 209 42.1
Potri.018G146001 Populus trichocarpa HOM05D001007 ORTHO05D002932 4.5e-27 125.6 79 77.2
SalBow6G3558 Salvia bowleyana HOM05D001007 ORTHO05D002932 5.0e-26 122.1 263 35.4
EL10Ac8g19404 Beta vulgaris HOM05D001007 ORTHO05D010847 3.2e-25 119.4 75 80.0
CBR_g19459 Chara braunii HOM05D001007 ORTHO05D002932 2.7e-19 99.8 279 26.9
Nitab4.5_0004809g0060 Nicotiana tabacum HOM05D001007 ORTHO05D002932 1.7e-13 80.5 92 52.2
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 5.9e-11 72.0 52 71.2
Cre06.g289950 Chlamydomonas reinhardtii HOM05D001007 ORTHO05D002932 5.0e-10 68.9 243 23.5
SEGI_09742 Sequoiadendron giganteum HOM05D001007 ORTHO05D000001 1.9e-09 67.0 86 47.7
Ca_07028_v3 Cicer arietinum L. HOM05D001007 ORTHO05D000001 4.3e-09 65.9 197 29.4
PRCOL_00005682 Prasinoderma coloniale HOM05D001007 ORTHO05D002932 1.0e-07 61.2 108 30.6
MCO11G945 Micromonas commoda HOM05D001007 ORTHO05D002932 1.4e-07 60.8 236 26.7
SMO141G0173 Selaginella moellendorffii HOM05D001007 ORTHO05D002932 1.4e-07 60.8 241 25.3
CsaV3_6G009310 Cucumis sativus L. HOM05D001007 ORTHO05D002932 5.2e-07 58.9 256 23.4
Sabra18G0127900 Salix brachista HOM05D001007 ORTHO05D029950 6.8e-07 58.5 49 61.2
Hund13099 Selenicereus undatus HOM05D001007 ORTHO05D002932 6.8e-07 58.5 212 26.9
ClCG06G003200 Citrullus lanatus HOM05D001007 ORTHO05D002932 1.2e-06 57.8 256 23.0
Pp3c14_23340 Physcomitrium patens HOM05D001007 ORTHO05D002932 2.6e-06 56.6 254 25.6
Oeu000156.1 Olea europaea HOM05D001007 ORTHO05D002932 5.7e-06 55.5 246 24.4
MELO3C021158.2 Cucumis melo HOM05D001007 ORTHO05D002932 9.8e-06 54.7 276 22.5
TPR.G647 Trifolium pratense HOM05D001007 ORTHO05D002932 9.8e-06 54.7 251 24.3


User provided reference genes

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