Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 7.9e-259 896.7 503 100.0
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 3.4e-225 785.0 503 86.5
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.6e-203 713.0 569 74.2
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.9e-192 675.6 554 74.0
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.4e-183 646.0 570 70.9
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 8.7e-173 610.9 574 64.6
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 6.2e-171 604.7 544 67.8
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 5.3e-170 601.7 573 64.6
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.2e-166 590.5 574 62.9
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 4.6e-166 588.6 567 63.1
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.8e-163 579.3 574 63.8
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 4.8e-163 578.6 567 60.5
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 2.6e-161 572.8 584 62.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.7e-160 570.1 585 60.9
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 3.8e-160 568.9 574 58.5
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.5e-160 568.2 574 62.4
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.5e-159 566.2 575 61.7
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.2e-158 563.9 575 60.9
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.7e-158 562.8 621 58.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.7e-158 562.8 621 58.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 6.1e-158 561.6 577 61.2
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.8e-157 560.1 578 61.1
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 9.7e-156 554.3 578 59.0
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.4e-154 549.7 570 59.3
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 4.1e-154 548.9 575 60.9
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 7.7e-153 544.7 576 57.3
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.7e-152 543.5 541 63.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 3.8e-152 542.3 577 59.1
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.9e-151 540.0 583 62.3
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.5e-151 538.5 584 62.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.6e-150 537.0 579 56.8
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 2.1e-150 536.6 572 57.7
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 3.6e-150 535.8 571 60.6
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.6e-150 535.8 576 60.4
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.0e-149 534.3 576 60.4
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-149 533.9 578 56.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.4e-149 533.9 572 59.4
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 2.3e-149 533.1 574 59.1
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.0e-149 532.7 577 58.1
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.1e-148 530.8 534 59.0
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.3e-148 529.3 577 58.2
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 4.4e-148 528.9 576 56.9
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 5.7e-148 528.5 586 59.2
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 9.7e-148 527.7 584 61.6
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 3.7e-147 525.8 572 60.3
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 6.3e-147 525.0 576 54.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.4e-146 523.1 573 59.0
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.6e-145 519.6 570 55.8
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 3.4e-145 519.2 577 54.6
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 4.5e-145 518.8 578 56.9
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.3e-144 517.3 577 55.6
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 3.2e-143 512.7 583 57.1
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.2e-143 512.7 576 56.1
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 9.4e-143 511.1 570 55.3
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.7e-142 508.8 563 57.2
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.0e-141 507.7 599 55.1
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 8.8e-141 504.6 608 55.3
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 2.6e-140 503.1 573 57.2
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 3.3e-140 502.7 587 56.4
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 5.7e-140 501.9 580 58.1
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 6.3e-139 498.4 523 63.3
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.1e-138 497.7 578 53.1
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.8e-138 496.9 576 58.2
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 9.1e-138 494.6 580 56.9
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 4.5e-137 492.3 534 60.5
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.2e-136 490.0 588 55.3
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 2.9e-136 489.6 577 56.3
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.5e-135 487.3 574 53.8
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 6.1e-134 481.9 531 57.8
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 5.2e-133 478.8 577 55.8
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.3e-131 474.2 581 53.7
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.8e-131 472.2 524 56.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.8e-130 470.3 563 51.7
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 4.1e-130 469.2 580 54.8
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.1e-130 469.2 563 56.1
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.0e-128 464.5 592 50.0
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.7e-128 463.8 510 55.1
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-127 460.7 618 48.7
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 4.2e-127 459.1 559 57.4
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 9.4e-127 458.0 581 56.1
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 8.0e-126 454.9 598 52.7
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.0e-125 454.5 574 50.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.5e-124 450.7 574 53.8
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 7.5e-124 448.4 579 54.9
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.2e-123 446.8 584 51.4
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.7e-123 446.0 580 53.3
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 3.7e-123 446.0 592 52.9
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.1e-122 443.0 550 50.9
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 4.1e-122 442.6 534 53.4
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 7.0e-122 441.8 331 72.5
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 9.1e-122 441.4 533 53.3
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.5e-121 439.5 616 47.1
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 5.9e-121 438.7 543 55.1
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.7e-120 437.2 546 54.6
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 2.9e-120 436.4 582 52.7
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.1e-119 434.5 503 57.9
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.6e-118 430.6 575 53.0
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 6.1e-118 428.7 577 52.7
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 6.1e-118 428.7 577 52.7
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.8e-117 427.2 575 53.2
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 8.9e-117 424.9 576 52.8
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.8e-115 419.9 331 69.2
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 6.3e-115 418.7 592 50.0
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.4e-114 416.8 556 52.2
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.1e-114 416.0 543 52.7
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.0e-112 411.4 543 50.5
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 6.6e-112 408.7 578 51.4
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 8.6e-112 408.3 570 51.9
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.5e-111 406.8 582 50.9
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 4.3e-111 406.0 575 50.8
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 4.3e-111 406.0 520 55.8
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 3.0e-109 399.8 487 57.3
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.5e-108 397.5 577 49.0
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.2e-107 393.7 328 65.2
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.4e-106 391.0 597 47.9
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.7e-104 384.0 502 53.2
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 5.0e-104 382.5 491 55.0
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 2.5e-103 380.2 568 50.9
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 3.6e-102 376.3 563 49.4
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 9.2e-98 361.7 548 51.5
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 9.2e-98 361.7 548 51.5
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.9e-96 356.3 557 44.5
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 4.3e-95 352.8 589 44.0
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.1e-93 346.7 404 56.4
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 7.5e-92 342.0 581 40.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 5.1e-88 329.3 553 42.3
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 6.6e-88 328.9 568 40.1
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-87 327.8 553 42.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.6e-86 323.2 553 41.6
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 3.1e-85 320.1 455 55.4
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.0e-85 319.7 546 42.3
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.0e-85 319.7 546 42.3
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 6.8e-85 318.9 433 51.7
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 8.9e-85 318.5 548 41.4
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 3.4e-84 316.6 204 74.0
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.4e-82 311.2 548 41.4
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 5.1e-80 302.8 523 45.3
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.3e-72 277.3 386 54.4
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.3e-71 273.1 326 51.5
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.8e-67 260.0 318 46.9
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 7.4e-63 245.7 321 57.3
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 3.7e-62 243.4 270 55.6
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.9e-56 223.4 390 49.5
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.9e-55 221.1 372 51.1
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.4e-47 192.6 511 33.7
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.0e-43 182.2 361 46.0
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 6.5e-43 179.5 189 60.3
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.0e-36 157.9 109 67.9
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-31 139.8 242 38.8
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.5e-28 131.7 165 58.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 9.7e-23 112.5 209 39.7
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.2e-22 111.3 147 40.1
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.1e-21 109.0 143 65.0
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 5.3e-21 106.7 526 26.0
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 7.0e-21 106.3 203 42.9
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.7e-19 101.7 108 48.1
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 3.8e-19 100.5 57 86.0
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.2e-17 95.5 51 84.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 4.7e-17 93.6 60 65.0
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.7e-15 86.7 132 46.2
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 9.7e-15 85.9 140 45.0
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.2e-14 84.7 121 47.9
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.1e-13 80.5 110 45.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-12 79.0 99 50.5
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-12 79.0 99 50.5
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 3.8e-11 73.9 54 63.0
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-10 72.0 117 43.6
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.7e-09 67.8 189 32.8
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.1e-09 66.6 120 42.5
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.0e-08 63.9 41 80.5
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.2e-06 58.2 124 36.3
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.8e-06 57.8 184 31.0


User provided reference genes

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