Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 4.5e-68 261.2 133 100.0
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 2.2e-38 162.5 83 96.4
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 2.2e-38 162.5 83 96.4
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 2.2e-38 162.5 83 96.4
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 6.3e-38 161.0 98 84.7
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 1.1e-37 160.2 98 84.7
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 7.0e-37 157.5 83 92.8
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 7.0e-37 157.5 83 94.0
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 9.1e-37 157.1 83 92.8
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 1.2e-36 156.8 98 83.7
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.2e-36 156.8 83 91.6
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 1.2e-36 156.8 83 91.6
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.6e-36 156.4 83 91.6
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 1.6e-36 156.4 83 91.6
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 1.6e-36 156.4 83 92.8
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 1.6e-36 156.4 83 91.6
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 1.6e-36 156.4 83 91.6
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 1.6e-36 156.4 83 91.6
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 1.6e-36 156.4 83 91.6
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 1.6e-36 156.4 83 91.6
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 91.6
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 2.0e-36 156.0 83 95.2
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 2.0e-36 156.0 81 93.8
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 2.6e-36 155.6 83 91.6
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 2.6e-36 155.6 83 94.0
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 2.6e-36 155.6 83 92.8
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 2.6e-36 155.6 83 94.0
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 2.6e-36 155.6 83 94.0
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 3.5e-36 155.2 81 92.6
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.5e-36 155.2 83 91.6
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.5e-36 155.2 83 91.6
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 3.5e-36 155.2 79 97.5
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 3.5e-36 155.2 81 92.6
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 3.5e-36 155.2 81 92.6
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 3.5e-36 155.2 81 92.6
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 4.5e-36 154.8 83 94.0
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 4.5e-36 154.8 83 94.0
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 4.5e-36 154.8 83 94.0
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 4.5e-36 154.8 83 94.0
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 4.5e-36 154.8 80 95.0
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 4.5e-36 154.8 83 94.0
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 4.5e-36 154.8 84 88.1
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 4.5e-36 154.8 83 94.0
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 4.5e-36 154.8 83 94.0
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 4.5e-36 154.8 83 94.0
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 5.9e-36 154.5 83 94.0
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 5.9e-36 154.5 83 94.0
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 5.9e-36 154.5 83 94.0
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 5.9e-36 154.5 83 94.0
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 5.9e-36 154.5 83 94.0
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 7.7e-36 154.1 83 92.8
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 7.7e-36 154.1 83 91.6
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 7.7e-36 154.1 83 89.2
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 7.7e-36 154.1 79 94.9
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 7.7e-36 154.1 83 94.0
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 7.7e-36 154.1 79 94.9
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.0e-35 153.7 83 92.8
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.3e-35 153.3 79 94.9
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.3e-35 153.3 79 94.9
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 1.3e-35 153.3 83 92.8
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.3e-35 153.3 83 92.8
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.3e-35 153.3 83 92.8
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.3e-35 153.3 83 92.8
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 1.3e-35 153.3 83 89.2
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 1.7e-35 152.9 83 92.8
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 1.7e-35 152.9 83 92.8
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 2.2e-35 152.5 79 97.5
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 2.2e-35 152.5 83 92.8
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 2.2e-35 152.5 82 91.5
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 2.9e-35 152.1 83 91.6
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 2.9e-35 152.1 83 88.0
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 2.9e-35 152.1 83 91.6
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 2.9e-35 152.1 83 90.4
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 2.9e-35 152.1 83 90.4
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 2.9e-35 152.1 83 90.4
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 3.8e-35 151.8 83 90.4
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 3.8e-35 151.8 86 89.5
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 5.0e-35 151.4 79 93.7
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 5.0e-35 151.4 79 93.7
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 6.5e-35 151.0 80 91.2
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 6.5e-35 151.0 80 91.2
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 6.5e-35 151.0 83 90.4
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 1.1e-34 150.2 79 92.4
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 1.5e-34 149.8 78 96.2
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 1.5e-34 149.8 79 92.4
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 1.9e-34 149.4 84 85.7
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.9e-34 149.4 78 96.2
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.9e-34 149.4 78 96.2
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 7.2e-34 147.5 78 92.3
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 7.2e-34 147.5 83 88.0
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 9.4e-34 147.1 83 86.7
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 3.6e-33 145.2 81 84.0
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 4.7e-33 144.8 96 80.2
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 1.4e-32 143.3 81 82.7
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 3.0e-32 142.1 80 82.5
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 9.7e-31 137.1 71 94.4
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 1.1e-29 133.7 83 71.1
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 1.4e-29 133.3 124 62.1
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.2e-25 120.2 79 79.7
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 1.0e-24 117.1 79 78.5
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.4e-24 116.7 58 94.8
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 2.2e-22 109.4 57 94.7
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 2.8e-22 109.0 78 60.3
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 2.4e-21 105.9 53 94.3
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 3.1e-21 105.5 54 94.4
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 4.1e-21 105.1 53 94.3
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 4.1e-21 105.1 70 78.6
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 9.1e-21 104.0 54 94.4
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 3.5e-20 102.1 53 92.5
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 3.5e-20 102.1 50 96.0
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 1.5e-18 96.7 53 90.6
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 1.9e-18 96.3 57 84.2
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 1.4e-08 63.5 31 90.3
SalBow6G5940 Salvia bowleyana HOM05D000567 ORTHO05D003993 2.9e-06 55.8 97 36.1
MSTRG.6452 Avicennia marina HOM05D003522 ORTHO05D003993 6.4e-06 54.7 89 37.1
Potri.006G174000 Populus trichocarpa HOM05D003522 ORTHO05D003993 6.4e-06 54.7 89 39.3
Potri.018G096200 Populus trichocarpa HOM05D003522 ORTHO05D003993 6.4e-06 54.7 89 39.3
Solyc06g072280.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 8.3e-06 54.3 89 37.1
Sopen06g028650 Solanum pennellii HOM05D003522 ORTHO05D003993 8.3e-06 54.3 89 37.1
PGSC0003DMG400027050 Solanum tuberosum HOM05D003522 ORTHO05D003993 8.3e-06 54.3 89 37.1


User provided reference genes

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