Gene: Potri.018G096200

General Information

Structural Information

  • Species Populus trichocarpa
  • Gene Identifier Potri.018G096200
  • Transcript Identifier Potri.018G096200.2
  • Gene Type Coding gene
  • Location Chr18 : 11716361-11719815 : negative

Gene Family Information

  • ID HOM05D003522
  • #Genes/#Species 194/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Potri.018G096200.v4.1
  • pacid 42801295
  • synonym POPTR_0018s10540

Descriptions

  • Description K11097 - small nuclear ribonucleoprotein E (SNRPE, SME)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT2G18740
GO:0048509
ISO
PLAZA Integrative Orthologyregulation of meristem development AT2G18740
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT2G18740

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G18740
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G18740
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G18740

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR027078 Small nuclear ribonucleoprotein E
IPR010920 LSM domain superfamily
Mapman id Description
16.2.2.5 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-E