Gene: AT5G48870

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G48870
  • Transcript Identifier AT5G48870.1
  • Gene Type Coding gene
  • Location Chr5 : 19813407-19814362 : positive

Gene Family Information

  • ID HOM05D004922
  • #Genes/#Species 151/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G48870.1
  • symbol SAD1
  • Alias AtLSM5,AtSAD1,LSM5,SM-like 5
  • full_name SUPERSENSITIVE TO ABA AND DROUGHT 1
  • uniprot Q9FKB0

Descriptions

  • Description Small nuclear ribonucleoprotein family protein
  • Computational description SUPERSENSITIVE TO ABA AND DROUGHT 1 (SAD1); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid2
GO:0009414
IMP
Gene Ontologyresponse to water deprivation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
ISS, IBA
Gene OntologyRNA binding1 2
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005688
IBA
Gene OntologyU6 snRNP1
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:1990726
IBA
Gene OntologyLsm1-7-Pat1 complex1
GO:0009536
HDA
Gene Ontologyplastid4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033871 Sm-like protein LSm5
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
Mapman id Description
16.2.3.5 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm5