Gene: Solyc06g072280.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g072280.3
  • Transcript Identifier Solyc06g072280.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 42230169-42232115 : positive

Gene Family Information

  • ID HOM05D003522
  • #Genes/#Species 194/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g072280.3.1
  • uniprot A0A3Q7GZB2
  • gene_id Solyc06g072280

Descriptions

  • Description Small nuclear ribonucleoprotein E (AHRD V3.3 *** S8CHW8_9LAMI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT2G18740
GO:0048509
ISO
PLAZA Integrative Orthologyregulation of meristem development AT2G18740
GO:0000387
IBA
IEA
GOA Databasespliceosomal snRNP assembly
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G18740
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G18740
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0046540
IBA
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0005687
IBA
IEA
GOA DatabaseU4 snRNP
GO:0005686
IBA
IEA
GOA DatabaseU2 snRNP
GO:0005685
IBA
IEA
GOA DatabaseU1 snRNP
GO:0005682
IBA
IEA
GOA DatabaseU5 snRNP
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027078 Small nuclear ribonucleoprotein E
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
Mapman id Description
16.2.2.5 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-E