Gene: Os05g0389300

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os05g0389300
  • Transcript Identifier Os05t0389300-01
  • Gene Type Coding gene
  • Location chr05 : 18838663-18840631 : negative

Gene Family Information

  • ID HOM05D004922
  • #Genes/#Species 151/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os05t0389300-01
  • MSU-ID LOC_Os05g32310.1
  • uniprot Q60E54

Descriptions

  • Description Similar to SAD1.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G48870
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT5G48870

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G48870

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0005688
IBA
GOA DatabaseU6 snRNP
GO:1990726
IBA
GOA DatabaseLsm1-7-Pat1 complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR033871 Sm-like protein LSm5
Mapman id Description
16.2.3.5 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm5