Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO306G0012 Selaginella moellendorffii HOM05D014392 ORTHO05D011519 0.0e+00 1914.8 937 100.0
SMO010G0021 Selaginella moellendorffii HOM05D014392 ORTHO05D011519 1.5e-239 833.6 707 63.9
SMO010G0005 Selaginella moellendorffii HOM05D014392 ORTHO05D011519 1.3e-233 813.9 707 63.1
SMO307G0067 Selaginella moellendorffii HOM05D014392 ORTHO05D011519 3.7e-201 706.1 739 55.6
SMO358G0068 Selaginella moellendorffii HOM05D014392 ORTHO05D011519 3.6e-172 609.8 645 55.5
SMO010G0002 Selaginella moellendorffii HOM05D014392 ORTHO05D011519 6.9e-131 472.6 294 79.9
SMO306G0020 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 1.7e-129 468.0 533 54.6
SMO270G0133 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 2.3e-94 351.3 498 47.2
SMO270G0057 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 3.7e-92 344.0 236 76.7
SMO358G0448 Selaginella moellendorffii HOM05D014392 ORTHO05D011519 5.9e-90 336.7 448 46.7
SMO159G0002 Selaginella moellendorffii HOM05D013418 ORTHO05D375080 2.2e-76 291.6 376 51.6
SMO116G0266 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 2.0e-61 241.9 392 43.4
Manes.18G104200 Manihot esculenta HOM05D005687 ORTHO05D007098 1.1e-59 236.1 396 40.7
EL10Ac1g00122 Beta vulgaris HOM05D005687 ORTHO05D007098 1.9e-59 235.3 395 40.5
TAR376G0067 Trochodendron aralioides HOM05D005687 ORTHO05D007098 2.4e-59 235.0 409 39.9
Zm00001eb422680 Zea mays HOM05D005687 ORTHO05D007098 4.1e-59 234.2 393 41.2
Mapoly0002s0019 Marchantia polymorpha HOM05D005687 ORTHO05D007098 7.0e-59 233.4 393 41.2
vmacro00992 Vaccinium macrocarpon HOM05D005687 ORTHO05D007098 7.0e-59 233.4 390 41.3
CANSAT35G0683 Cannabis sativa HOM05D005687 ORTHO05D007098 2.7e-58 231.5 400 39.8
SMO155G0003 Selaginella moellendorffii HOM05D014392 ORTHO05D379004 3.5e-58 231.1 133 85.0
Actinidia01555 Actinidia chinensis HOM05D005687 ORTHO05D007098 7.8e-58 229.9 415 39.5
Glyma.12G001400 Glycine max HOM05D005687 ORTHO05D007098 1.3e-57 229.2 397 39.8
Gorai.009G288500 Gossypium raimondii HOM05D005687 ORTHO05D007098 1.7e-57 228.8 396 40.7
Phvul.011G001500 Phaseolus vulgaris HOM05D005687 ORTHO05D007098 1.7e-57 228.8 397 40.1
Solyc11g022390.2 Solanum lycopersicum HOM05D005687 ORTHO05D007098 1.7e-57 228.8 400 39.5
AUR62004616 Chenopodium quinoa HOM05D005687 ORTHO05D007098 2.3e-57 228.4 395 39.5
Gohir.A05G273000 Gossypium hirsutum HOM05D005687 ORTHO05D007098 2.3e-57 228.4 396 40.7
Sopen11g011260 Solanum pennellii HOM05D005687 ORTHO05D007098 2.3e-57 228.4 400 39.5
HanXRQChr02g0044211 Helianthus annuus HOM05D005687 ORTHO05D007098 3.0e-57 228.0 394 41.1
Lj3g0026050 Lotus japonicus HOM05D005687 ORTHO05D007098 3.0e-57 228.0 413 39.0
Os04g0434300 Oryza sativa ssp. japonica HOM05D005687 ORTHO05D007098 3.0e-57 228.0 396 39.9
Peaxi162Scf00391g00732 Petunia axillaris HOM05D005687 ORTHO05D007098 3.0e-57 228.0 400 40.2
MD08G1219300 Malus domestica HOM05D005687 ORTHO05D007098 5.0e-57 227.3 395 40.5
CDE06G1536 Ceratophyllum demersum HOM05D005687 ORTHO05D007098 6.6e-57 226.9 395 39.7
VMungo1127G0635 Vigna mungo HOM05D005687 ORTHO05D007098 6.6e-57 226.9 397 39.8
AUR62022645 Chenopodium quinoa HOM05D005687 ORTHO05D007098 8.6e-57 226.5 395 39.5
Prupe.1G553700 Prunus persica HOM05D005687 ORTHO05D007098 8.6e-57 226.5 399 40.1
PGR042G3796 Punica granatum HOM05D005687 ORTHO05D007098 8.6e-57 226.5 432 37.5
CAN.G155.2 Capsicum annuum HOM05D005687 ORTHO05D007098 1.1e-56 226.1 396 39.1
Nn5g27549 Nelumbo nucifera HOM05D005687 ORTHO05D007098 1.1e-56 226.1 395 39.2
Thecc.08G189500 Theobroma cacao HOM05D005687 ORTHO05D007098 1.1e-56 226.1 396 40.4
CSS0035020 Camellia sinensis var. sinensis HOM05D005687 ORTHO05D007098 1.5e-56 225.7 392 39.8
CSS0048983 Camellia sinensis var. sinensis HOM05D005687 ORTHO05D007098 1.5e-56 225.7 392 39.8
Gohir.D05G275400 Gossypium hirsutum HOM05D005687 ORTHO05D007098 1.5e-56 225.7 337 43.3
Nitab4.5_0001534g0050 Nicotiana tabacum HOM05D005687 ORTHO05D007098 1.5e-56 225.7 396 39.9
Nitab4.5_0003826g0010 Nicotiana tabacum HOM05D005687 ORTHO05D007098 1.5e-56 225.7 396 39.9
HPP92_016134 Vanilla planifolia HOM05D005687 ORTHO05D007098 1.5e-56 225.7 395 40.5
Potri.013G107800 Populus trichocarpa HOM05D005687 ORTHO05D007098 1.9e-56 225.3 396 40.2
QL02p026060 Quercus lobata HOM05D005687 ORTHO05D007098 1.9e-56 225.3 418 39.2
Sabra13G0093200 Salix brachista HOM05D005687 ORTHO05D007098 1.9e-56 225.3 400 40.0
TPR.G34137 Trifolium pratense HOM05D005687 ORTHO05D007098 1.9e-56 225.3 397 39.5
CiPaw.08G002200 Carya illinoinensis HOM05D005687 ORTHO05D007098 2.5e-56 224.9 400 39.8
ClCG08G000280 Citrullus lanatus HOM05D005687 ORTHO05D007098 2.5e-56 224.9 399 39.1
Dinv41744 Davidia involucrata HOM05D005687 ORTHO05D007098 2.5e-56 224.9 395 40.0
MD15G1407900 Malus domestica HOM05D005687 ORTHO05D007098 4.3e-56 224.2 399 39.6
Hund16781 Selenicereus undatus HOM05D005687 ORTHO05D007098 4.3e-56 224.2 395 39.5
Sc01g0001920 Simmondsia chinensis HOM05D005687 ORTHO05D007098 4.3e-56 224.2 395 39.2
PSO017G1535 Papaver somniferum HOM05D005687 ORTHO05D007098 5.6e-56 223.8 415 38.6
ATR1134G072 Amborella trichopoda HOM05D005687 ORTHO05D007098 7.3e-56 223.4 393 39.4
Ca_19701_v3 Cicer arietinum L. HOM05D005687 ORTHO05D007098 7.3e-56 223.4 400 38.8
RcHm_v2.0_Chr7g0228031 Rosa chinensis HOM05D005687 ORTHO05D007098 7.3e-56 223.4 400 39.8
CsaV3_5G040460 Cucumis sativus L. HOM05D005687 ORTHO05D007098 1.2e-55 222.6 399 38.6
Medtr4g033210 Medicago truncatula HOM05D005687 ORTHO05D007098 1.2e-55 222.6 393 39.4
Psat7g144520 Pisum sativum HOM05D005687 ORTHO05D007098 1.2e-55 222.6 393 39.4
Ciclev10000582m.g Citrus clementina HOM05D005687 ORTHO05D007098 2.1e-55 221.9 430 37.2
Eucgr.F03000 Eucalyptus grandis HOM05D005687 ORTHO05D007098 2.1e-55 221.9 392 39.3
Hma1.2p1_0004F.1_g003990 Hydrangea macrophylla HOM05D005687 ORTHO05D007098 2.1e-55 221.9 396 39.1
Lsat_1_v5_gn_1_12201 Lactuca sativa HOM05D005687 ORTHO05D007098 2.8e-55 221.5 405 40.5
PSO170G1542 Papaver somniferum HOM05D005687 ORTHO05D007098 2.8e-55 221.5 396 39.6
MELO3C022220.2 Cucumis melo HOM05D005687 ORTHO05D007098 3.6e-55 221.1 399 38.6
DCAR_017367 Daucus carota HOM05D005687 ORTHO05D007098 3.6e-55 221.1 413 39.2
Cpa.g.sc66.10 Carica papaya HOM05D005687 ORTHO05D007098 4.7e-55 220.7 392 39.3
GSVIVG01034468001 Vitis vinifera HOM05D005687 ORTHO05D007098 4.7e-55 220.7 395 39.0
Aqoxy5G02668 Aquilegia oxysepala HOM05D005687 ORTHO05D007098 6.2e-55 220.3 396 39.1
unitig_32.g11184 Utricularia gibba HOM05D001035 ORTHO05D007098 6.2e-55 220.3 395 39.2
FvH4_5g32030 Fragaria vesca HOM05D005687 ORTHO05D007098 8.1e-55 219.9 393 39.4
FAN08G1133 Fragaria x ananassa HOM05D005687 ORTHO05D007098 8.1e-55 219.9 393 39.4
FAN18G2804 Fragaria x ananassa HOM05D005687 ORTHO05D007098 8.1e-55 219.9 393 39.4
THA.LOC104800128 Tarenaya hassleriana HOM05D005687 ORTHO05D007098 1.8e-54 218.8 395 38.2
arahy.Tifrunner.gnm1.ann1.BDG91C Arachis hypogaea HOM05D005687 ORTHO05D007098 2.3e-54 218.4 397 38.5
SalBow6G3036 Salvia bowleyana HOM05D005687 ORTHO05D007098 2.3e-54 218.4 395 39.5
AT1G72090 Arabidopsis thaliana HOM05D005687 ORTHO05D007098 4.0e-54 217.6 393 38.7
MSTRG.1558 Avicennia marina HOM05D005687 ORTHO05D007098 5.2e-54 217.2 392 39.3
Carub.0002s1887 Capsella rubella HOM05D005687 ORTHO05D007098 5.2e-54 217.2 393 38.4
Aa31LG4G8560 Aethionema arabicum HOM05D005687 ORTHO05D007098 6.8e-54 216.9 396 37.9
AL2G31710 Arabidopsis lyrata HOM05D005687 ORTHO05D007098 6.8e-54 216.9 393 38.7
Pp3c6_10380 Physcomitrium patens HOM05D005687 ORTHO05D007098 6.8e-54 216.9 393 39.7
arahy.Tifrunner.gnm1.ann1.H6WZRG Arachis hypogaea HOM05D005687 ORTHO05D007098 8.9e-54 216.5 397 38.3
Cc10_g10120 Coffea canephora HOM05D005687 ORTHO05D007098 1.2e-53 216.1 392 39.0
Lalb_Chr19g0140501 Lupinus albus HOM05D005687 ORTHO05D007098 1.2e-53 216.1 396 37.6
SMO307G0089 Selaginella moellendorffii HOM05D014392 ORTHO05D375344 1.2e-53 216.1 164 68.9
SGA_v2.0_scaffold118G32517 Striga asiatica HOM05D005687 ORTHO05D007098 1.5e-53 215.7 396 38.6
Cfa012938 Carpinus fangiana HOM05D005687 ORTHO05D007098 3.4e-53 214.5 400 39.0
CARHR064900 Cardamine hirsuta HOM05D005687 ORTHO05D007098 4.4e-53 214.2 396 37.9
TWI59G0019 Tripterygium wilfordii HOM05D005687 ORTHO05D007098 4.4e-53 214.2 456 36.8
Thhalv10018307m.g Eutrema salsugineum HOM05D005687 ORTHO05D007098 1.3e-52 212.6 393 38.2
Atru.chr13.2348 Acer truncatum HOM05D005687 ORTHO05D007098 2.9e-52 211.5 396 37.9
A07p38240 Brassica napus HOM05D005687 ORTHO05D007098 4.9e-52 210.7 396 37.4
BraA07t31389Z Brassica rapa HOM05D005687 ORTHO05D007098 4.9e-52 210.7 396 37.4
Haze_21291 Corylus avellana HOM05D005687 ORTHO05D007098 6.4e-52 210.3 358 39.9
FAN04G0407 Fragaria x ananassa HOM05D005687 ORTHO05D007098 8.3e-52 209.9 412 37.6
Sp5g27150 Schrenkiella parvula HOM05D005687 ORTHO05D007098 1.1e-51 209.5 395 37.2
BcaB03g14944 Brassica carinata HOM05D005687 ORTHO05D007098 1.4e-51 209.1 395 37.2
C06p46310 Brassica napus HOM05D005687 ORTHO05D007098 1.9e-51 208.8 396 37.1
BolC6t39676H Brassica oleracea HOM05D005687 ORTHO05D007098 1.9e-51 208.8 396 36.9
BcaC08g46660 Brassica carinata HOM05D005687 ORTHO05D007098 2.4e-51 208.4 395 37.0
ECA247G1762 Erigeron canadensis HOM05D005687 ORTHO05D007098 4.1e-51 207.6 301 45.8
Migut.C01307 Erythranthe guttata HOM05D005687 ORTHO05D007098 7.1e-51 206.8 392 38.3
COL.COLO4_15121 Corchorus olitorius HOM05D005687 ORTHO05D007098 1.9e-48 198.7 266 45.5
Lj7A623G45 Lonicera japonica HOM05D005687 ORTHO05D007098 3.3e-48 198.0 244 48.8
PGSC0003DMG401009270 Solanum tuberosum HOM05D005687 ORTHO05D007098 9.5e-48 196.4 261 44.8
Sed0023668 Sechium edule HOM05D005687 ORTHO05D007098 9.2e-43 179.9 168 56.5
SEGI_17032 Sequoiadendron giganteum HOM05D005687 ORTHO05D007098 6.0e-42 177.2 165 57.6
AagrBONN_evm.TU.Sc2ySwM_344.3251 Anthoceros agrestis HOM05D005687 ORTHO05D007098 4.3e-40 171.0 241 43.2
CBR_g25878 Chara braunii HOM05D005687 ORTHO05D007098 4.3e-40 171.0 254 41.3
Hma1.2p1_0004F.1_g004000 Hydrangea macrophylla HOM05D005687 ORTHO05D007098 4.7e-39 167.5 161 54.7
SGA_v2.0_scaffold118G32527 Striga asiatica HOM05D005687 ORTHO05D007098 4.7e-39 167.5 245 42.9
SMO307G0027 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 6.9e-38 163.7 298 32.2
MCO07G120 Micromonas commoda HOM05D005687 ORTHO05D007098 3.4e-37 161.4 328 34.1
Cre03.g149300 Chlamydomonas reinhardtii HOM05D005687 ORTHO05D007098 3.0e-33 148.3 324 33.0
PRCOL_00002733 Prasinoderma coloniale HOM05D005687 ORTHO05D007098 2.0e-29 135.6 249 38.6
Duzib177G0394 Durio zibethinus HOM05D005687 ORTHO05D007098 1.6e-23 115.9 252 36.9
C06p46220 Brassica napus HOM05D005687 ORTHO05D007098 2.0e-21 109.0 95 55.8
SMO268G0048 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 5.8e-21 107.5 150 36.0
Glyma.08G239201 Glycine max HOM05D005687 ORTHO05D007098 2.2e-20 105.5 54 83.3
SMO177G0008 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 1.4e-19 102.8 140 36.4
Glyma.02G018600 Glycine max HOM05D005687 ORTHO05D007098 5.1e-17 94.4 74 60.8
SMO155G0007 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 1.2e-13 83.2 69 65.2
SMO115G0290 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 1.0e-12 80.1 80 43.8
Pp3c23_19910 Physcomitrium patens HOM05D012329 ORTHO05D011519 4.9e-12 77.8 151 30.5
Pp3c8_590 Physcomitrium patens HOM05D012329 ORTHO05D011519 4.9e-12 77.8 193 26.9
SMO001G0002 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 9.3e-11 73.6 91 52.7
SMO001G0007 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 9.3e-11 73.6 91 52.7
SMO205G0003 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 2.3e-09 68.9 54 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1340 Anthoceros agrestis HOM05D008475 ORTHO05D000004 1.6e-07 62.8 126 31.0
AagrBONN_evm.TU.Sc2ySwM_369.106 Anthoceros agrestis HOM05D008475 ORTHO05D009448 1.6e-07 62.8 160 30.0
SMO270G0027 Selaginella moellendorffii HOM05D005687 ORTHO05D007098 2.1e-07 62.4 91 48.4
QL08p020799 Quercus lobata HOM05D005687 ORTHO05D007098 2.8e-07 62.0 45 55.6
AagrBONN_evm.TU.Sc2ySwM_117.3258 Anthoceros agrestis HOM05D008475 ORTHO05D000004 4.8e-07 61.2 104 32.7
SMO111G0016 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 4.1e-06 58.2 62 41.9
SMO306G0011 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 4.1e-06 58.2 405 20.7
Zm00001eb082610 Zea mays HOM05D005687 ORTHO05D007098 5.3e-06 57.8 44 61.4


User provided reference genes

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