Gene: Solyc11g022390.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g022390.2
  • Transcript Identifier Solyc11g022390.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 13792187-13804155 : positive

Gene Family Information

  • ID HOM05D005687
  • #Genes/#Species 136/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g022390.2.1
  • uniprot A0A3Q7IU47
  • gene_id Solyc11g022390

Descriptions

  • Description tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (AHRD V3.3 *** A0A327YSB6_9BACI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035600
IBA
IEA
GOA DatabasetRNA methylthiolation
GO:0035600
IEA
InterProtRNA methylthiolation
GO:0006400
IEA
GOA DatabasetRNA modification
GO:0006400
IEA
InterProtRNA modification

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0035598
IBA
IEA
GOA DatabaseN6-threonylcarbomyladenosine methylthiotransferase activity
GO:0035598
IEA
InterProN6-threonylcarbomyladenosine methylthiotransferase activity
GO:0035596
IEA
GOA Databasemethylthiotransferase activity
GO:0035596
IEA
InterPromethylthiotransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016740
IEA
InterProtransferase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0061712
IEA
GOA DatabasetRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005783
IBA
GOA Databaseendoplasmic reticulum
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005839 Methylthiotransferase
IPR006638 Elp3/MiaB/NifB
IPR006466 MiaB-like tRNA modifying enzyme, archaeal-type
IPR038135 Methylthiotransferase, N-terminal domain superfamily
IPR023404 Radical SAM, alpha/beta horseshoe
IPR013848 Methylthiotransferase, N-terminal
IPR007197 Radical SAM
Mapman id Description
16.5.6.1 RNA processing.RNA modification.methylthiolation.tRNA methylthiotransferase