Gene: AUR62004616
General Information
Structural Information
- Species Chenopodium quinoa
- Gene Identifier AUR62004616
- Transcript Identifier AUR62004616-RA
- Gene Type Coding gene
- Location C_Quinoa_Scaffold_4250 : 5459048-5478120 : negative
Gene Family Information
- ID HOM05D005687
- #Genes/#Species 136/95
- Phylogenetic origin
- ID ORTHO05D007098
- #Genes/#Species 134/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id AUR62004616.v1.0
- pacid 36318932
- uniprot A0A803L006
Descriptions
- Description cdkal1: Threonylcarbamoyladenosine tRNA methylthiotransferase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006400 | IEA | GOA Database | tRNA modification | |
| GO:0006400 | IEA | InterPro | tRNA modification | |
| GO:0035600 | IEA | GOA Database | tRNA methylthiolation | |
| GO:0035600 | IEA | InterPro | tRNA methylthiolation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051539 | IEA | GOA Database | 4 iron, 4 sulfur cluster binding | |
| GO:0051539 | IEA | InterPro | 4 iron, 4 sulfur cluster binding | |
| GO:0035596 | IEA | GOA Database | methylthiotransferase activity | |
| GO:0035596 | IEA | InterPro | methylthiotransferase activity | |
| GO:0035598 | IEA | GOA Database | N6-threonylcarbomyladenosine methylthiotransferase activity | |
| GO:0035598 | IEA | InterPro | N6-threonylcarbomyladenosine methylthiotransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016740 | IEA | InterPro | transferase activity | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0051536 | IEA | GOA Database | iron-sulfur cluster binding | |
| GO:0051536 | IEA | InterPro | iron-sulfur cluster binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005783 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum | AT1G72090 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006638 | Elp3/MiaB/NifB |
| IPR006466 | MiaB-like tRNA modifying enzyme, archaeal-type |
| IPR013848 | Methylthiotransferase, N-terminal |
| IPR038135 | Methylthiotransferase, N-terminal domain superfamily |
| IPR005839 | Methylthiotransferase |
| IPR007197 | Radical SAM |
| IPR002792 | TRAM domain |
| IPR023404 | Radical SAM, alpha/beta horseshoe |
| Mapman id | Description |
|---|---|
| 16.5.6.1 | RNA processing.RNA modification.methylthiolation.tRNA methylthiotransferase |