Gene: Carub.0002s1887

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0002s1887
  • Transcript Identifier Carub.0002s1887.1
  • Gene Type Coding gene
  • Location scaffold_2 : 10674973-10678207 : positive

Gene Family Information

  • ID HOM05D005687
  • #Genes/#Species 136/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0002s1887.v1.1
  • pacid 39244143
  • synonym Carubv10021633m.g

Descriptions

  • Description 2.8.4.5 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase / Methylthio-threonylcarbamoyl-adenosine transferase B
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006400
IEA
InterProtRNA modification
GO:0035600
IEA
InterProtRNA methylthiolation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0016740
IEA
InterProtransferase activity
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0035598
IEA
InterProN6-threonylcarbomyladenosine methylthiotransferase activity
GO:0035596
IEA
InterPromethylthiotransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005783
ISO
PLAZA Integrative Orthologyendoplasmic reticulum AT1G72090

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007197 Radical SAM
IPR005839 Methylthiotransferase
IPR006466 MiaB-like tRNA modifying enzyme, archaeal-type
IPR038135 Methylthiotransferase, N-terminal domain superfamily
IPR023404 Radical SAM, alpha/beta horseshoe
IPR013848 Methylthiotransferase, N-terminal
IPR006638 Elp3/MiaB/NifB
Mapman id Description
16.5.6.1 RNA processing.RNA modification.methylthiolation.tRNA methylthiotransferase