Gene: AT1G72090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G72090
  • Transcript Identifier AT1G72090.1
  • Gene Type Coding gene
  • Location Chr1 : 27123617-27126767 : positive

Gene Family Information

  • ID HOM05D005687
  • #Genes/#Species 136/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G72090.1
  • uniprot Q9C7H2

Descriptions

  • Description Methylthiotransferase
  • Computational description Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, catalytic activity; INVOLVED IN: metabolic process, RNA modification; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), Aldolase-type TIM barrel (InterPro:IPR013785), Methylthiotransferase, conserved site (InterPro:IPR020612), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), MiaB-like tRNA modifying enzyme, archaeal-type (InterPro:IPR006466); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT4G36390.1); Has 15738 Blast hits to 15705 proteins in 2423 species: Archae - 403; Bacteria - 9758; Metazoa - 296; Fungi - 1; Plants - 135; Viruses - 0; Other Eukaryotes - 5145 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035600
IEA
GOA DatabasetRNA methylthiolation
GO:0035600
IBA
Gene OntologytRNA methylthiolation1
GO:0035600
IEA
InterProtRNA methylthiolation
GO:0006400
IEA
GOA DatabasetRNA modification
GO:0006400
IEA
InterProtRNA modification

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035596
IEA
GOA Databasemethylthiotransferase activity
GO:0035596
IEA
InterPromethylthiotransferase activity
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016740
IEA
InterProtransferase activity
GO:0035598
IEA
GOA DatabaseN6-threonylcarbomyladenosine methylthiotransferase activity
GO:0035598
IBA
Gene OntologyN6-threonylcarbomyladenosine methylthiotransferase activity1
GO:0035598
IEA
InterProN6-threonylcarbomyladenosine methylthiotransferase activity
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0061712
IEA
Gene OntologytRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005783
IDA
GOA Databaseendoplasmic reticulum
GO:0005783
HDA
IBA
Gene Ontologyendoplasmic reticulum1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038135 Methylthiotransferase, N-terminal domain superfamily
IPR006638 Elp3/MiaB/NifB
IPR023404 Radical SAM, alpha/beta horseshoe
IPR007197 Radical SAM
IPR006466 MiaB-like tRNA modifying enzyme, archaeal-type
IPR005839 Methylthiotransferase
IPR013848 Methylthiotransferase, N-terminal
Mapman id Description
16.5.6.1 RNA processing.RNA modification.methylthiolation.tRNA methylthiotransferase