Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.4e-301 1038.9 540 100.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 6.1e-156 555.1 539 62.9
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 6.7e-155 551.6 537 63.3
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.0e-154 550.1 534 62.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 9.7e-154 547.7 533 61.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.8e-152 543.5 538 60.4
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.9e-150 536.2 539 61.6
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.5e-149 531.9 538 60.2
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.2e-148 530.8 535 60.6
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 2.7e-148 529.6 548 60.0
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 8.0e-148 528.1 539 61.8
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.0e-146 523.5 537 60.0
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.3e-146 522.7 539 61.4
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.7e-145 520.4 531 60.5
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.7e-145 519.2 541 59.5
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 6.3e-145 518.5 536 59.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.3e-145 518.5 536 58.8
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.3e-144 515.4 530 58.9
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 5.3e-144 515.4 534 58.6
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.9e-142 509.6 534 59.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 8.5e-142 508.1 552 58.5
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 2.5e-141 506.5 530 60.2
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.5e-141 506.5 526 58.0
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.1e-140 503.4 534 58.2
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 8.0e-140 501.5 533 57.2
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.0e-139 501.1 535 58.3
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 6.8e-139 498.4 539 58.3
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.5e-138 497.3 533 58.3
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.6e-138 496.5 534 58.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.7e-138 495.4 533 58.2
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.3e-137 494.2 524 59.0
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.3e-137 494.2 539 57.7
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.7e-137 493.8 538 58.6
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 6.3e-137 491.9 537 57.0
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 3.1e-136 489.6 541 56.2
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 2.0e-135 486.9 540 55.4
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 2.3e-134 483.4 544 56.2
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.8e-134 482.6 540 56.7
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.8e-134 482.6 539 57.3
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.5e-134 481.9 581 52.2
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.5e-134 481.9 581 52.2
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.1e-133 481.1 560 55.2
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.5e-133 479.9 540 56.7
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.5e-133 479.9 539 57.1
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.8e-131 473.8 546 53.8
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.0e-131 473.0 534 55.6
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 2.6e-130 469.9 537 56.2
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 8.3e-129 464.9 546 54.6
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.4e-128 464.2 546 55.9
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.1e-128 462.6 548 56.0
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 5.4e-128 462.2 536 54.1
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 9.2e-128 461.5 540 55.0
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.5e-127 459.5 563 51.7
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.5e-127 459.1 530 54.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.0e-126 458.0 550 54.9
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.7e-126 457.2 544 56.1
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-126 457.2 534 53.7
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 2.9e-126 456.4 543 53.4
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.0e-126 455.7 548 55.7
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.3e-125 453.0 538 52.4
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 4.3e-125 452.6 535 55.9
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.6e-125 452.2 476 59.2
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.6e-124 450.7 539 52.1
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.1e-124 450.3 498 57.6
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.6e-124 449.5 570 52.1
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 4.7e-124 449.1 497 57.3
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 6.8e-123 445.3 535 53.5
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 6.8e-123 445.3 526 54.4
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.6e-122 443.4 542 53.3
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 4.4e-122 442.6 544 52.0
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 4.9e-121 439.1 569 51.0
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.9e-121 439.1 510 54.5
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.4e-120 437.6 476 57.4
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.0e-119 433.7 547 51.7
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 6.0e-119 432.2 535 54.2
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.0e-118 429.9 554 53.2
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.9e-118 429.5 546 52.0
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.9e-118 429.5 579 51.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 8.6e-118 428.3 538 52.6
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 5.6e-117 425.6 539 53.1
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 9.5e-117 424.9 551 50.3
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.6e-116 424.1 572 51.6
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 8.0e-116 421.8 512 52.9
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.4e-115 421.0 538 52.0
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.2e-114 417.9 536 51.9
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.0e-114 417.2 360 63.3
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.0e-114 417.2 542 51.7
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 3.7e-113 412.9 539 51.4
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.4e-112 411.0 519 54.3
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.4e-112 410.2 473 56.4
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.2e-112 409.8 550 48.2
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 6.0e-111 405.6 506 54.2
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 3.9e-110 402.9 542 50.4
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 8.6e-110 401.7 544 50.2
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 8.6e-110 401.7 544 50.2
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 4.3e-109 399.4 560 49.8
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 7.3e-109 398.7 542 51.5
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.1e-107 394.8 542 49.6
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 5.2e-107 392.5 544 49.3
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.0e-106 390.6 536 49.4
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.8e-106 389.0 543 49.7
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 9.9e-106 388.3 541 48.6
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 4.9e-105 386.0 532 51.5
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 4.9e-105 386.0 557 50.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.4e-104 384.4 457 55.8
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.1e-103 380.6 534 50.2
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 7.8e-103 378.6 536 48.5
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.3e-102 377.9 537 49.0
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 3.9e-102 376.3 535 47.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 6.2e-100 369.0 527 48.4
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 4.0e-99 366.3 537 48.4
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.2e-97 360.5 518 47.5
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.4e-96 357.8 494 52.6
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.6e-95 354.4 463 52.9
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.3e-94 351.3 831 35.7
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 2.3e-94 350.5 521 48.0
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 5.6e-93 345.9 530 44.5
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 3.1e-91 340.1 527 45.2
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.6e-90 335.5 572 43.0
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.4e-88 331.3 523 46.8
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.4e-88 331.3 523 46.8
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.7e-87 327.0 323 57.0
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.1e-85 321.6 507 46.5
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 4.3e-85 319.7 538 45.9
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 6.9e-83 312.4 559 41.1
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 5.8e-82 309.3 407 56.0
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.8e-81 306.6 524 42.7
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.2e-80 303.5 417 50.6
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.4e-80 302.8 544 43.0
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-79 301.6 540 43.9
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.7e-79 300.4 529 42.7
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-78 298.5 540 43.5
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.9e-78 296.6 544 43.0
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.9e-78 296.6 360 58.1
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 5.1e-78 296.2 544 42.8
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 8.7e-78 295.4 554 39.9
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.1e-69 268.5 437 46.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.8e-67 261.2 356 53.7
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 6.0e-63 246.1 195 62.6
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 3.9e-62 243.4 308 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.5e-61 241.5 352 41.5
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.0e-50 204.5 308 40.3
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.6e-50 204.1 328 47.9
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.6e-45 187.6 401 42.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 7.0e-43 179.5 312 45.2
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.2e-41 174.5 222 52.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.0e-37 161.4 490 33.1
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-31 141.0 245 40.8
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.6e-31 140.6 175 53.1
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 6.8e-30 136.3 174 51.1
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.8e-28 130.2 101 60.4
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-19 102.4 232 38.8
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.4e-19 100.1 131 54.2
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 9.1e-19 99.4 195 47.2
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 9.1e-19 99.4 103 59.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 5.9e-18 96.7 291 34.7
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 3.6e-15 87.4 66 68.2
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 6.1e-15 86.7 140 35.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.0e-14 84.3 216 36.1
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.0e-14 84.0 298 27.5
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.4e-13 80.9 237 34.6
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 9.8e-13 79.3 521 26.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.4e-11 75.5 48 62.5
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 4.1e-11 73.9 75 57.3
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 5.4e-11 73.6 60 65.0
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 5.4e-11 73.6 65 58.5
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 5.4e-11 73.6 65 58.5
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.0e-11 73.2 221 36.7
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 9.2e-11 72.8 93 48.4
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.6e-10 72.0 54 63.0
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.7e-10 71.2 58 60.3
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.5e-10 70.5 60 63.3
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 2.5e-08 64.7 42 69.0
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.2e-07 62.4 57 52.6
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-07 60.8 53 58.5
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.2e-06 57.0 130 30.0


User provided reference genes

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