Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 1.1e-173 613.2 301 100.0
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 2.8e-126 455.7 318 72.6
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.1e-125 453.8 315 71.4
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 1.8e-125 453.0 327 70.0
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.1e-125 452.2 328 69.5
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 6.9e-125 451.1 328 69.2
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.2e-124 450.3 318 71.4
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 2.0e-124 449.5 333 68.2
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.6e-124 449.1 327 68.8
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.6e-124 449.1 322 69.6
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.5e-124 448.4 334 68.0
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 7.6e-124 447.6 321 69.8
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 1.0e-123 447.2 321 69.5
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.7e-123 446.4 295 74.6
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.2e-123 446.0 316 70.9
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.2e-123 446.0 328 68.3
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 2.9e-123 445.7 327 68.2
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 2.9e-123 445.7 318 69.8
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 3.8e-123 445.3 328 68.6
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 4.9e-123 444.9 320 70.6
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.9e-123 444.9 318 69.2
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.5e-123 444.5 340 66.8
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 6.5e-123 444.5 340 66.8
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 8.4e-123 444.1 316 70.6
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 8.4e-123 444.1 328 68.3
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.1e-122 443.7 314 70.1
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.4e-122 443.4 339 65.8
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.4e-122 443.4 325 69.2
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 1.4e-122 443.4 311 71.4
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.9e-122 443.0 340 66.5
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 1.9e-122 443.0 342 66.7
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 2.5e-122 442.6 321 70.1
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 2.5e-122 442.6 318 69.5
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 4.2e-122 441.8 352 64.8
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 4.2e-122 441.8 318 69.5
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 5.5e-122 441.4 339 67.6
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 7.1e-122 441.0 321 68.8
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 9.3e-122 440.7 319 69.6
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 9.3e-122 440.7 315 68.9
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 9.3e-122 440.7 336 66.4
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 1.2e-121 440.3 327 67.3
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 2.1e-121 439.5 319 68.7
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.7e-121 439.1 314 70.1
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 2.7e-121 439.1 314 70.1
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 3.5e-121 438.7 342 64.9
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 7.9e-121 437.6 378 60.6
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 7.9e-121 437.6 351 64.4
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.0e-120 437.2 326 67.5
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.0e-120 437.2 327 67.0
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 1.0e-120 437.2 348 65.8
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 1.0e-120 437.2 312 69.6
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 1.8e-120 436.4 319 68.3
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 2.3e-120 436.0 326 67.8
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 3.9e-120 435.3 337 66.2
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 5.1e-120 434.9 352 63.1
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 6.7e-120 434.5 319 69.0
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.1e-119 433.7 345 64.1
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 1.5e-119 433.3 368 60.9
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.5e-119 433.3 340 65.3
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 4.3e-119 431.8 319 67.7
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 5.7e-119 431.4 321 67.6
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 1.1e-117 427.2 369 61.0
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 1.4e-117 426.8 336 64.6
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 5.3e-117 424.9 307 68.1
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 6.9e-117 424.5 339 63.7
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 6.9e-117 424.5 312 67.9
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 1.5e-116 423.3 319 66.1
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.0e-116 422.9 327 64.5
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 2.0e-116 422.9 329 64.7
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.6e-116 422.5 347 62.8
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.9e-115 419.1 327 65.1
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.9e-115 419.1 327 65.1
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 3.8e-115 418.7 324 67.0
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 5.0e-115 418.3 333 64.6
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 2.5e-114 416.0 306 68.0
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 9.3e-114 414.1 391 57.0
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.6e-113 413.3 386 58.5
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 2.1e-113 412.9 403 55.6
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 2.7e-113 412.5 384 59.1
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 7.9e-113 411.0 305 68.2
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.0e-112 410.6 309 66.7
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.8e-112 409.8 318 65.7
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 2.5e-111 406.0 339 61.7
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 7.4e-111 404.4 287 71.8
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 7.4e-111 404.4 316 66.1
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 9.7e-111 404.1 281 71.5
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.7e-110 403.3 302 68.5
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 2.2e-110 402.9 314 62.4
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 3.7e-110 402.1 300 68.0
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 4.1e-109 398.7 293 69.6
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 1.5e-108 396.7 333 60.4
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.5e-106 389.4 314 63.1
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 5.1e-104 381.7 314 60.8
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 8.8e-104 380.9 322 63.7
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 2.2e-102 376.3 316 63.6
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 4.8e-102 375.2 319 63.0
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 6.9e-101 371.3 320 59.4
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 1.0e-99 367.5 223 79.8
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.9e-99 365.9 271 70.5
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 2.1e-97 359.8 213 80.3
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 2.1e-97 359.8 213 80.3
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 6.1e-97 358.2 220 79.1
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 8.8e-96 354.4 312 57.4
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.5e-95 353.6 204 83.3
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 7.0e-93 344.7 211 79.6
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.6e-92 343.6 211 78.7
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 3.8e-91 339.0 289 60.9
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 3.1e-85 319.3 255 63.5
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 1.7e-83 313.5 327 50.2
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.7e-83 313.5 221 71.5
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 1.1e-82 310.8 332 49.1
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 4.2e-82 308.9 273 61.2
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.4e-72 277.3 327 48.0
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.6e-71 273.1 259 56.8
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 2.4e-69 266.5 202 66.8
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 7.8e-68 261.5 208 64.4
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 3.8e-67 259.2 420 38.8
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 1.1e-61 241.1 219 58.9
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 4.6e-52 209.1 268 45.5
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 5.6e-34 149.1 76 88.2
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 7.3e-34 148.7 194 46.4
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 9.0e-32 141.7 122 60.7
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.5e-26 124.4 81 76.5
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 9.6e-26 121.7 195 40.5
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 2.0e-23 114.0 64 81.2
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 2.2e-22 110.5 85 65.9
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.9e-22 110.2 64 78.1
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 3.8e-22 109.8 64 78.1
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 5.4e-21 105.9 85 63.5
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 9.3e-21 105.1 86 59.3
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.6e-18 95.9 60 78.3
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 1.6e-17 94.4 72 62.5
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.0e-16 89.7 60 70.0
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 4.0e-16 89.7 81 56.8
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 7.6e-15 85.5 56 73.2
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.9e-11 73.2 44 70.5
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 5.6e-10 69.3 51 64.7
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 6.2e-09 65.9 34 76.5
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 4.0e-08 63.2 44 68.2
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 3.4e-07 60.1 77 44.2


User provided reference genes

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