Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 7.2e-103 377.5 222 100.0
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 5.6e-39 165.2 224 50.0
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 1.2e-38 164.1 238 47.5
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 5.6e-31 138.7 264 41.7
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.6e-30 137.1 185 45.9
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.1e-30 136.7 263 39.9
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 4.7e-30 135.6 159 50.9
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 8.1e-30 134.8 154 50.6
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 1.1e-29 134.4 201 42.8
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.1e-29 134.4 218 42.7
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.1e-29 134.4 226 41.6
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 1.4e-29 134.0 237 41.8
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 5.2e-29 132.1 251 40.2
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 6.8e-29 131.7 233 42.9
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.0e-28 130.2 226 44.7
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 2.0e-28 130.2 236 43.6
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.6e-28 129.8 226 44.2
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 2.6e-28 129.8 120 58.3
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 3.4e-28 129.4 155 50.3
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 3.4e-28 129.4 156 50.6
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 4.4e-28 129.0 149 51.7
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 5.8e-28 128.6 224 39.7
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 5.8e-28 128.6 120 58.3
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 7.6e-28 128.3 231 44.6
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 2.2e-27 126.7 158 48.7
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 2.9e-27 126.3 232 40.1
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 8.4e-27 124.8 200 45.5
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 8.4e-27 124.8 242 41.7
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 1.9e-26 123.6 159 47.2
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 2.4e-26 123.2 198 41.9
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 3.2e-26 122.9 174 48.9
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 3.2e-26 122.9 184 45.7
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 4.1e-26 122.5 229 41.9
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 4.1e-26 122.5 232 39.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 5.4e-26 122.1 150 49.3
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 7.1e-26 121.7 233 44.6
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 7.1e-26 121.7 233 44.6
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 9.2e-26 121.3 247 39.3
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 9.2e-26 121.3 231 39.4
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.2e-25 120.9 150 48.7
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 2.1e-25 120.2 146 51.4
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 2.1e-25 120.2 243 38.7
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 3.5e-25 119.4 119 55.5
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 3.5e-25 119.4 120 56.7
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 3.5e-25 119.4 120 56.7
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 3.5e-25 119.4 187 43.3
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 3.5e-25 119.4 120 56.7
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 3.5e-25 119.4 250 38.0
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 4.6e-25 119.0 150 53.3
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 4.6e-25 119.0 244 44.3
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 4.6e-25 119.0 183 44.8
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 6.0e-25 118.6 176 46.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 6.0e-25 118.6 150 54.0
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 7.8e-25 118.2 150 47.3
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.0e-24 117.9 157 47.1
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.0e-24 117.9 118 56.8
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.0e-24 117.9 179 44.7
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 1.3e-24 117.5 119 57.1
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.7e-24 117.1 114 56.1
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.3e-24 116.7 166 47.6
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 3.0e-24 116.3 119 54.6
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 3.0e-24 116.3 119 54.6
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 3.9e-24 115.9 119 53.8
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 6.6e-24 115.2 122 51.6
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 6.6e-24 115.2 233 47.2
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 1.1e-23 114.4 119 52.9
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 1.1e-23 114.4 119 52.9
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 1.1e-23 114.4 119 52.9
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.1e-23 114.4 234 37.6
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.1e-23 114.4 234 37.6
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.1e-23 114.4 245 38.4
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 1.1e-23 114.4 123 56.1
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.5e-23 114.0 210 38.6
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 1.5e-23 114.0 252 37.3
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 1.5e-23 114.0 116 56.9
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 1.9e-23 113.6 147 49.0
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.9e-23 113.6 177 44.1
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 5.6e-23 112.1 119 52.9
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 5.6e-23 112.1 119 52.9
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 5.6e-23 112.1 250 37.6
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 5.6e-23 112.1 250 37.6
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 5.6e-23 112.1 174 45.4
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 7.3e-23 111.7 238 43.7
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 9.6e-23 111.3 175 45.7
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 9.6e-23 111.3 144 48.6
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 9.6e-23 111.3 144 48.6
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 9.6e-23 111.3 172 42.4
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 9.6e-23 111.3 169 45.6
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 1.2e-22 110.9 117 53.0
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 1.2e-22 110.9 187 46.5
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.6e-22 110.5 237 37.6
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 2.1e-22 110.2 252 39.3
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 2.8e-22 109.8 151 45.0
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.8e-22 109.8 224 40.6
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 2.8e-22 109.8 235 36.6
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 2.8e-22 109.8 167 44.3
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 3.6e-22 109.4 241 44.8
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 3.6e-22 109.4 117 52.1
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 3.6e-22 109.4 117 52.1
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 3.6e-22 109.4 117 52.1
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 3.6e-22 109.4 117 52.1
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 3.6e-22 109.4 234 36.3
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 4.7e-22 109.0 251 38.6
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.7e-22 109.0 118 53.4
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.7e-22 109.0 118 53.4
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 6.2e-22 108.6 230 43.9
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 8.1e-22 108.2 218 38.5
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 1.1e-21 107.8 149 45.0
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 3.1e-21 106.3 112 55.4
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.1e-21 106.3 183 42.1
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 3.1e-21 106.3 246 36.2
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 4.0e-21 105.9 247 44.9
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.0e-21 105.9 183 43.2
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 4.0e-21 105.9 240 36.7
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 6.9e-21 105.1 112 52.7
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 6.9e-21 105.1 200 48.5
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 8.9e-21 104.8 173 42.2
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 8.9e-21 104.8 112 54.5
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 8.9e-21 104.8 164 42.7
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.2e-20 104.4 98 56.1
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 1.5e-20 104.0 112 53.6
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 1.5e-20 104.0 168 44.6
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.5e-20 104.0 108 51.9
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.5e-20 104.0 108 51.9
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 3.4e-20 102.8 170 41.8
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 7.6e-20 101.7 178 41.6
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.3e-19 100.9 250 40.8
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.3e-19 100.9 250 40.8
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.3e-19 100.9 166 42.8
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 1.7e-19 100.5 242 40.1
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.2e-19 100.1 228 41.2
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 2.2e-19 100.1 184 42.4
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 2.9e-19 99.8 239 42.7
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 3.8e-19 99.4 254 40.9
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 3.8e-19 99.4 168 40.5
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.9e-19 99.0 236 38.6
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 6.4e-19 98.6 127 47.2
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 3.2e-18 96.3 139 46.0
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 3.2e-18 96.3 112 46.4
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 3.2e-18 96.3 112 46.4
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 4.2e-18 95.9 152 51.3
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 4.2e-18 95.9 182 37.9
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 9.3e-18 94.7 118 50.0
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 1.6e-17 94.0 166 41.6
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 1.6e-17 94.0 181 38.1
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.1e-17 93.6 197 41.6
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 2.7e-17 93.2 198 41.4
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 3.5e-17 92.8 117 49.6
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 3.5e-17 92.8 94 52.1
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 3.5e-17 92.8 94 52.1
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 3.5e-17 92.8 198 40.4
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 4.6e-17 92.4 195 40.5
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.6e-17 92.4 77 61.0
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 6.0e-17 92.0 184 39.7
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.0e-17 92.0 197 41.6
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 7.8e-17 91.7 81 56.8
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.7e-16 90.5 202 38.6
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 5.1e-16 89.0 78 60.3
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 5.1e-16 89.0 80 58.8
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 8.7e-16 88.2 164 44.5
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.5e-15 87.4 193 36.8
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.9e-15 87.0 107 47.7
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 2.5e-15 86.7 224 33.0
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.3e-15 86.3 196 36.2
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.1e-14 83.6 161 44.1
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.8e-13 80.5 83 56.6
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 9.0e-13 78.2 71 57.7
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 9.0e-13 78.2 71 57.7
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 2.2e-11 73.6 135 45.9
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 1.2e-09 67.8 65 52.3
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 2.7e-09 66.6 131 38.2
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 8.7e-08 61.6 65 56.9


User provided reference genes

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