Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 4.2e-269 931.0 559 100.0
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 9.6e-197 690.6 506 82.2
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 5.3e-187 658.3 541 79.1
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.7e-185 653.3 535 77.8
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 6.0e-183 644.8 506 75.3
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.4e-179 632.9 524 73.7
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.0e-178 629.8 529 74.1
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 5.9e-178 628.2 511 74.2
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.0e-174 617.5 529 73.7
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-174 616.7 531 73.4
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.3e-174 616.3 530 73.2
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 3.0e-174 615.9 526 78.3
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 8.2e-172 607.8 523 69.6
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.5e-170 603.6 530 72.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 6.1e-167 591.7 527 72.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.4e-166 590.5 528 73.7
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.8e-166 590.1 540 70.2
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 5.1e-166 588.6 531 70.4
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.6e-165 586.3 527 67.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.3e-164 583.9 529 70.1
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-164 583.6 533 67.0
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.8e-164 582.8 532 65.6
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 3.7e-164 582.4 530 72.5
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.8e-164 582.0 560 67.0
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.3e-164 581.6 574 68.5
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.3e-164 581.6 574 68.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.0e-162 576.6 535 70.3
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 6.5e-161 571.6 529 73.2
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.9e-160 570.1 533 66.4
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 4.2e-160 568.9 535 70.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.2e-160 568.2 527 69.8
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.5e-157 560.5 533 67.0
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 5.7e-157 558.5 529 64.3
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 5.7e-157 558.5 539 67.7
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.1e-155 554.3 530 67.5
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 2.4e-155 553.1 514 72.6
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 4.1e-155 552.4 533 69.8
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.2e-154 550.8 530 71.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 7.7e-154 548.1 525 70.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.5e-152 543.1 487 69.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.2e-152 542.7 539 71.4
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 4.2e-152 542.3 486 68.5
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 5.5e-152 542.0 532 66.2
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 9.4e-152 541.2 469 75.1
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.1e-151 540.0 539 69.6
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.4e-150 537.3 511 67.9
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.8e-150 537.0 530 63.0
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 5.2e-150 535.4 533 71.7
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 5.2e-150 535.4 540 68.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.0e-149 533.5 539 70.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.6e-149 533.1 539 70.9
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.3e-149 532.7 527 63.9
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-148 530.4 541 68.0
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.7e-148 530.4 531 66.1
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 4.1e-147 525.8 801 47.8
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.6e-146 523.9 359 80.5
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 2.0e-146 523.5 529 62.2
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 2.7e-146 523.1 536 64.9
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 4.5e-146 522.3 528 66.1
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.3e-145 520.8 528 65.9
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 5.5e-144 515.4 529 67.7
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 9.4e-144 514.6 527 65.8
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.6e-143 513.8 547 65.6
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.6e-143 513.8 510 72.2
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 6.1e-143 511.9 534 68.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 8.0e-143 511.5 532 60.3
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.4e-142 510.8 534 64.4
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.8e-142 510.4 530 66.4
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.3e-142 510.0 494 72.7
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.5e-141 507.3 530 64.2
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 7.5e-141 505.0 527 66.6
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.1e-139 501.1 530 64.5
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.8e-139 500.4 553 60.8
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.4e-139 500.0 527 63.2
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 4.1e-139 499.2 531 69.1
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 5.9e-138 495.4 530 63.4
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 7.7e-138 495.0 528 62.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.3e-137 493.4 512 69.3
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.5e-136 488.8 479 62.2
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 6.1e-135 485.3 527 58.1
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.0e-134 484.6 533 67.7
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 3.0e-134 483.0 533 67.5
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 5.2e-134 482.3 535 67.5
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 5.2e-134 482.3 535 67.5
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 8.9e-134 481.5 539 61.0
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 2.6e-133 479.9 535 67.1
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 5.7e-133 478.8 516 67.2
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 5.7e-133 478.8 534 60.5
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.7e-133 478.8 529 56.9
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.3e-132 477.6 531 67.8
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.9e-132 475.7 555 55.1
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 2.4e-131 473.4 537 55.9
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 3.1e-131 473.0 508 66.5
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.1e-131 472.6 531 54.6
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-128 464.5 531 57.3
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-128 464.2 556 55.0
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 2.5e-128 463.4 528 65.7
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.8e-126 457.2 533 64.5
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 5.2e-126 455.7 519 60.7
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.5e-125 454.1 532 59.2
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 4.4e-125 452.6 531 64.8
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.7e-124 450.7 531 60.3
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 4.9e-124 449.1 532 62.4
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 4.1e-123 446.0 526 54.4
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 7.0e-123 445.3 530 57.7
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.0e-122 442.2 549 54.6
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.6e-119 434.1 485 66.2
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 6.2e-119 432.2 521 61.8
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 8.0e-119 431.8 534 58.1
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.2e-118 429.1 586 53.8
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 2.9e-116 423.3 541 61.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.1e-115 421.4 529 52.0
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.7e-113 414.1 530 58.3
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.6e-111 407.5 524 56.7
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.8e-110 404.1 524 59.2
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.8e-110 404.1 524 59.2
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 2.9e-108 396.7 451 64.7
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.6e-106 391.0 479 59.5
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.7e-106 390.2 537 57.0
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.5e-104 384.4 454 64.3
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.9e-99 367.5 324 62.7
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.1e-98 364.0 428 68.9
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 7.3e-96 355.5 535 47.1
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 4.4e-93 346.3 399 64.9
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 3.8e-92 343.2 527 49.1
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.4e-91 341.3 528 48.5
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 3.5e-90 336.7 324 76.9
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 5.1e-89 332.8 516 45.5
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 8.1e-87 325.5 513 55.9
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.8e-86 324.3 511 42.5
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 9.0e-86 322.0 516 45.2
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.3e-84 318.2 350 69.1
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.4e-84 315.5 517 44.1
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 5.4e-83 312.8 517 42.7
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-82 311.6 518 43.2
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-82 311.6 517 43.9
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.9e-82 308.9 515 45.0
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 9.6e-80 302.0 351 55.3
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 1.3e-79 301.6 195 74.4
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.4e-77 293.5 410 49.5
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.0e-69 267.7 368 64.9
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.0e-68 265.4 313 58.1
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.4e-61 240.4 353 61.8
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.8e-60 236.9 307 50.2
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.5e-52 209.1 224 58.0
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 7.7e-45 186.0 261 51.0
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.5e-44 182.6 472 36.0
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.0e-40 171.4 176 78.4
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.4e-38 164.5 181 69.6
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-32 145.6 235 40.4
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.7e-32 143.3 101 68.3
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.6e-26 125.2 294 38.1
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.0e-25 120.6 89 82.0
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 4.0e-25 120.6 201 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.2e-19 100.5 136 40.4
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.6e-18 98.6 311 29.3
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.8e-18 97.8 56 83.9
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.8e-17 95.1 51 84.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.3e-15 89.0 54 64.8
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 2.9e-15 87.8 158 46.2
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 7.0e-14 83.2 58 69.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.0e-12 79.3 207 47.3
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.3e-11 73.9 228 34.2
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.3e-09 68.2 130 30.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.2e-09 67.0 178 37.1
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.3e-07 59.7 100 44.0
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 2.4e-06 58.2 82 48.8


User provided reference genes

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